Renibacterium salmoninarum: RSal33209_0923
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Entry
RSal33209_0923 CDS
T00641
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rsa
Renibacterium salmoninarum
Pathway
rsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSal33209_0923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsa03019
]
RSal33209_0923
03009 Ribosome biogenesis [BR:
rsa03009
]
RSal33209_0923
Enzymes [BR:
rsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RSal33209_0923
Messenger RNA biogenesis [BR:
rsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSal33209_0923
Ribosome biogenesis [BR:
rsa03009
]
Prokaryotic type
rRNA helicases
RSal33209_0923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
UvrA_inter
Ribosomal_L12_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABY22666
UniProt:
A9WNH6
LinkDB
All DBs
Position
787282..789240
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AA seq
652 aa
AA seq
DB search
MTGSVTQRCPALVQMRNIPMSENTQNSSAEIENSAPAETEEQDVLFTDFGLDGRVLAALK
DVGYEKPSPIQAATIPVLLEGRDVVGLAQTGTGKTAAFALPALSRMANLPATKDTQILVL
APTRELALQVAEAFSSYAAHMDNFSVLPVYGGSAYGPQLAGLRRGAQVVVGTPGRVIDHL
SKGSLDLSNLQYLVLDEADEMLRMGFADDVEQILAETPEDKQVALFSATMPGQIRRIAKK
YLNNPAEISVKAKTTTGENTRQRYLQVMGPHKLDAMTRILEVEDYDGVIAFVRTKMATEE
LADKLKSRGYRAAAINGDIPQQQRERTVEALRSGSIDVLVATDVAARGLDVERISLVVNY
DIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIEKATRQPVEQMHLPSADTIN
NLRLSKFADQITETLGSQELSVFRELISTYEQEHDVTAAEIAAALAYMAQGGESLLVKDL
PAAPEYQKRERAKDGFGSRGPTRTLTEGNATYRIAVGRRQRVMPGSIVGAIANEGGLSSS
QIGGIDIRADHTLVELPAELSKDQWRALSKTRIGGELIRLELDSGRKPRSEREGEGFSGG
GGGGYKGKREGGERSFGACSTGGGHTGHGAGDRKPRHGKTDGGKDFNRKGKW
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgactggaagcgtgacacaacgctgtccggccctagtgcaaatgaggaatatccccatg
tccgaaaacacccaaaatagctctgcagaaattgaaaactcggcaccggctgagaccgaa
gaacaagatgtactcttcaccgactttggccttgatggccgagtgcttgctgctctgaaa
gatgttggctacgagaagccgtccccgatccaggccgcaaccattccggtgctgttggaa
gggcgcgacgtcgtcggcctggctcagaccggtaccggtaagaccgcggccttcgcgctg
ccggcgctatcgcggatggcaaaccttccggccaccaaagacactcagatcctggtgctc
gcaccgacccgcgaactcgcgctgcaggttgccgaagcattttcttcctacgccgcgcac
atggacaacttcagtgtgctgcccgtctacggtggctcggcttatggcccgcagctggcc
ggtttgcgccgtggtgcgcaggtcgtggtgggaacccctggtcgcgttatcgaccacctt
tccaagggttcgttggacttgtccaacctgcagtacttggtcttggatgaagccgatgag
atgttgcggatgggcttcgctgacgacgtcgagcagatcctggctgagacgccggaggac
aagcaagttgcgctgttctccgcgactatgccgggccagatccgccgaatcgccaagaaa
tacttgaacaacccggccgaaatctcggtcaaagcgaagaccaccactggcgaaaacact
cgtcagcgttaccttcaggtgatgggcccgcacaagctcgacgcgatgacccggattctt
gaagttgaagactacgacggcgttatcgccttcgtgcgcaccaaaatggcaaccgaagag
cttgccgataagttgaagtcacgcggctaccgtgcggcagcaatcaacggtgacatcccg
cagcaacagcgcgagcgcaccgttgaggcacttcgttcaggcagcattgacgtgctggtt
gctactgacgttgccgctcgtggtttggacgttgagcgcatcagcttggtagtcaactac
gacattccgcatgatacggagtcctacgtgcaccgtattggccgtaccggccgtgctggc
cgttcaggcgacgcaatcctgttcatgaccccgcgggagaagtacttgctgcgcgcgatt
gagaaggctactcgtcagccggttgagcagatgcacttgcctagtgcggacaccattaac
aacctgcgtttgagcaagtttgccgatcaaatcactgagaccttgggttcacaagaactt
tcagttttccgtgaattgatcagcacctatgagcaagagcacgacgttacggcggcagag
attgctgctgcgctggcctacatggcgcagggtggcgaatccttgttggtcaaggatctg
cctgcggcgccggaataccagaagcgtgaacgcgctaaggacggcttcggctcgcgtggt
ccgacccgcaccctcactgaaggcaacgcgacctaccggatcgccgtcggccgtcgtcag
cgggttatgcccggctcgatcgttggcgctattgccaacgaaggtggcttgtcctcttcg
cagatcggcggcatcgatatacgtgccgaccacactctggttgaactgccggctgagctg
agcaaggatcagtggcgtgcactgtccaagactcggattggcggcgagctgattcgtttg
gagttggattccggccgcaagccgcgttccgagcgtgaaggcgaaggcttcagcggcggt
ggtggcggtggctacaagggcaagcgtgaaggtggcgagcgtagctttggtgcgtgttcc
actggcggtggccacaccggtcacggcgcaggggaccgcaagcctcgccatggcaagacc
gacggcggtaaagatttcaaccgcaagggcaagtggtaa
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