Renibacterium salmoninarum: RSal33209_1235
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Entry
RSal33209_1235 CDS
T00641
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rsa
Renibacterium salmoninarum
Pathway
rsa03420
Nucleotide excision repair
rsa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSal33209_1235
03430 Mismatch repair
RSal33209_1235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsa03400
]
RSal33209_1235
Enzymes [BR:
rsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSal33209_1235
DNA repair and recombination proteins [BR:
rsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSal33209_1235
MMR (mismatch excision repair)
Other MMR factors
RSal33209_1235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
PhoH
Motif
Other DBs
NCBI-ProteinID:
ABY22973
UniProt:
A9WPI8
LinkDB
All DBs
Position
1049823..1053065
Genome browser
AA seq
1080 aa
AA seq
DB search
MSEALSGTARQPTAEQRAIIEASLDPMLVIAGAGSGKTTTMADRVVHLVANRLAKPEEIL
GVTFTRKAAGELAAKIRAKLRILGQQNPELSDVLGPDSLEAEISTYHSYASGIVSDYGLR
IGVERDATVLGQAQCWQLASKIVEAYDGDLSRYSGASSTLVQAVISLASECAEHLQNPRD
VETWLAALRDEFEALPLNTGKGRGPAGKALELADRLDIRAHVAQMVQQYQLAKSQRNALD
YGDLVALAAKLALNVPEVAEQERLKHRVVLLDEFQDTSHAQLTLFAALFGAGHPVTAVGD
PHQSIYGFRGASAGQLFRFPGIFRRADGQPAETAALTVAWRNSLSILESANAMSSELNRR
AEQGHAESSTQLSPLQPRPGAPRGEVELSRFGTENEEAQAVADRILARRSVRSQDVSVAI
LCRRRTQFQALQTALEAQNIDYEIVGLSGLLATPEVIDVVSTLRVLVDPTRSDALMRLMT
GARWRIGSKDLMALADWSKFLVASAKRARKASPTVIDDVAEAASLIEAIDALDADYWPDS
ARELSATGLQRLLALRDELRTLRRFVGDDLLSLISEVERTILLDIELAAKPGISYHRARH
HLDAFQDAASSFLQSAERVDVLAFLAWLSAADGEEGGLEMLPVEPKSGAVQLLTVHAAKG
LEWDEVYVPGLATKSFPSDRADHWGTGNRALPWPLRGDRADLPEWKLQGEDQRTWIGELA
EFTESVKDHALQEERRLAYVAYTRARSFLAVSTSKFAGTSVRAKEISPFLTELVDVAEQE
SAASYGLGFRHWPAEQHLPEENPEREAVIRAQWPFDPLAGPYLKIGEKVVEPLGSRRAAL
LSAAQRVQAARPSELSLPELSARWGIEAKRLLEQRTVRKQVIDVELPTHISASTLVELRV
NPAAVVAQIRRPVPRKPGLAARKGTAFHAWVESYFGRAGQLDLGEFPGAADDFVEDAYQL
EQLRENFEASEWAAKQPSEIEVPIETKIAGVVVRGRIDAVFQDADGGWELVDWKTGQLPK
GKELGDRSVQLALYRLGWARLKGIAVEKVRAAFYYAARNQTERVLDLAGEQELESIISQA
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggcgttgagcggcaccgcacggcagcccaccgccgagcagcgggcgattatc
gaagcgtccctggatccgatgctggtcatcgccggtgccggatctggaaagaccaccaca
atggcagatcgagttgtgcaccttgttgccaaccgattagccaagccagaagagattctt
ggcgttacattcactcgaaaagctgccggtgaactggcagctaaaattcgagccaaactg
cggattctcggccagcaaaatccggaactctcagatgtgctgggcccggactctctggaa
gccgaaatttctacttaccattcctacgccagcgggattgtttcagactatggccttcga
atcggggtagaacgggatgccacggtgctggggcaggcgcagtgttggcaattggcaagc
aagattgtggaggcgtacgacggcgatttgtctcggtattctggtgcgtcctcgacgcta
gtgcaggccgtgatttccttagcctccgaatgcgcagaacatcttcaaaatccccgtgac
gttgaaacttggctagccgcgttacgtgatgaatttgaagcgctgccattgaacactgga
aaaggccgtggcccggctggcaaggctttagagcttgctgaccggctcgacatccgggca
catgtggcacaaatggttcagcaataccagctcgcaaagtctcaacggaatgccctggac
tacggcgatttagtggcgcttgcggccaagctcgcgttgaacgtgcctgaagtggcagaa
caagaacggctaaaacaccgagtggtgctacttgatgagtttcaagacacttcgcacgcc
cagctgaccttattcgcggcgcttttcggcgctggtcatccggtcaccgcggtcggggat
ccgcaccagtcgatctatggattccggggtgcatcggcaggtcagcttttccggtttccc
ggaatctttcgccgtgcggacgggcagccagctgaaaccgcggcgttgaccgttgcctgg
cgaaactcactgtcgattcttgaatccgcaaatgcaatgtctagcgagctcaatcgtcga
gctgaacaagggcacgcggaatcgtcgacgcaactctcgccgctgcagccacggcccgga
gcaccgcgcggcgaagtggaactttccagatttggcacggaaaacgaagaggcccaggct
gtggcagatcgtattttggcacggcgatcggtccggtcccaggacgtcagcgtggcgatt
ttgtgccgccgcagaacgcagtttcaagccctgcaaactgccctggaagcgcaaaatatc
gactatgaaatcgttggtctgagtggtctattggccactccagaggttattgatgtggtc
tcaaccttgcgtgttctagtagacccaactcgctctgatgcactcatgcgattgatgacc
ggtgcgcgttggcgaatcggcagcaaagatctgatggccttggcagactggtcgaagttt
ttagttgccagcgcgaaacgagcccgcaaggcaagtcctacagttattgacgatgtagct
gaagctgcaagtttgatcgaggcaatcgatgccttggacgctgattactggccagattcc
gctcgtgagctcagcgcaacggggctgcaacgcctgctggcattgcgtgatgaactgcga
acgttacgccgttttgtgggtgatgacttgctcagcttgattagcgaagtagaacggacc
attctgctcgacattgaactcgccgccaaacccggaatctcctaccatcgcgcccggcat
catcttgatgcctttcaagatgcggcgtcctccttcctgcaaagcgctgaacgcgttgat
gtgctggcgttcttggcttggttatccgccgcagacggtgaagaaggcggactggaaatg
cttcccgtagagcctaagtctggtgcggtgcagcttttgaccgtgcacgcggcaaaggga
cttgaatgggacgaagtgtatgttccggggttggcgacgaagagttttcctagcgatcgg
gccgatcattggggtactggaaatcgcgctttgccctggcccttacgcggggaccgagcc
gatttgccggaatggaagctccaaggggaggaccagcgaacttggattggtgaattagct
gaattcacggagtccgtcaaagatcatgcactacaagaagagcgtcgactggcctatgtt
gcctatacccgagcccggagctttctggccgtaagcacgtcaaagtttgctggcacttcg
gtacgtgcgaaggaaatttcacccttcctgactgagctggtggacgtcgcggagcaagaa
tcggcggcaagctatggtctgggatttaggcattggccagcagagcagcatcttccagag
gaaaatccagagcgtgaggcagtaattcgcgcgcaatggccattcgatcctttggcgggt
ccatatctgaagattggcgagaaagtggtagagccattgggcagccgccgggcggcgttg
ctatccgcggcacagcgggtgcaagccgcacggccctcagagctttcgctgcccgagctc
agtgctcggtgggggattgaagctaagcgccttctggagcaacgtaccgtgcgaaagcaa
gtgatcgacgtcgaactaccgacgcatatttccgcttcaacgctagttgagctgcgcgtc
aatccagcggcggttgttgcccagattcggcggccggttccccgaaagccaggtctcgcg
gcacgcaaaggtacagccttccacgcctgggtagaaagctatttcggccgcgccggccag
cttgacttgggcgagtttcctggcgccgctgatgattttgttgaagatgcttatcagctt
gagcagcttcgagagaattttgaagcatccgaatgggcggccaaacagccaagtgaaatt
gaagttccgattgagacgaaaattgcgggcgtggtagttcgcggacgaatagacgccgtg
ttccaagatgccgatggcggatgggaattggtcgattggaagactgggcagttacccaag
ggtaaagaacttggcgaccgttcagtgcagctggcgctttaccgtctaggttgggcgcgg
ctcaaagggattgcggtagagaaggtccgggccgccttttattatgccgcccggaatcag
accgagcgcgtactagacctagcaggagagcaagagctggaaagcattatttcccaagcc
tag
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