Renibacterium salmoninarum: RSal33209_1413
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Entry
RSal33209_1413 CDS
T00641
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rsa
Renibacterium salmoninarum
Brite
KEGG Orthology (KO) [BR:
rsa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsa03019
]
RSal33209_1413 (hrpA)
Enzymes [BR:
rsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RSal33209_1413 (hrpA)
Messenger RNA biogenesis [BR:
rsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RSal33209_1413 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
HA2_C
Helicase_C
WHD_HA2
AAA_22
AAA_19
nSTAND3
AAA_23
PhoH
ResIII
TsaE
T2SSE
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
ABY23150
UniProt:
A9WQ04
LinkDB
All DBs
Position
complement(1203358..1207248)
Genome browser
AA seq
1296 aa
AA seq
DB search
MSLTITYPPELPVSARREELMAAIRDHQVVIIAGETGSGKTTQIPKMCLELGLTEPGKDG
KPRLIGHTQPRRLAARTVAERIAAELDVKIGEEVGFQVRFTGEVSRQTKVKVMTDGILLA
EIQRDKLLHRYSTLIIDEAHERSLNIDFILGYLRQILPKRPDLKIIITSATIDPERFAQH
FAIDNVPAPIEEVSGRTYPVEIRYRPLDGSDGEPAEQSEDDSEDKDPLDAVCDAVEELSG
EAPGDVLIFFSGEREIRDAAEALRGRFAHHPRLREAEILPLFARLSLAEQHAVFSPGSRR
RIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERISQASANQRAGRCGR
VSDGICIRLYSEADFQGRREFTDPEILRTNLAAVILQMSAIGVAREPKDVASFPFVEPPD
AKAIADGVALLSELGALQPDGGISPVGRQLAQLPVDPRLGRMIVESGKRGCAREVMILAA
ALTIQDPRERPTEKRQIADEKHKRFSDENSDFTGFLNLWRYLQEKQKELSSTAFRRLCKA
EFINYLRVREWQDLFAQLRQLAKPLNITLSTGEVDPVGLHIPVHQSLLAGLLSHLGLFDD
RKREYAGARGSRFAIFPGSALFKKNPDWVMSAELVETSRLWARVNARIDPIWAEEVAAGL
VKRSYSEPHWSKRNGSVMAYEKVTLFGVPIVAQRRINYGRIDAPLSRELFIRHALVEGDW
RTHHKFFHRNQSVLAEVEELETRMRRRDLRVDDETLFEFYDARVGAEVVSERHFDKWWKS
ARHENPTLLDFDPGVVMTEDADLDETAYPKSIRHGEFELALSYEFQPSSQYLAAGTPVND
SDGVTVTVPVLFLNQLEDAPFKWQIPGLRAELVTALIKSLPKPVRKNFVPAPDVGRQAAT
ALAADLDPSQDDLESSLELALRRLRGHVIPPGSWNWDAVPVHLRMTFQVVDSAGKILDKG
KDLAALQESLAGATRRAIAESLGAMPKTAAPKNPAQRGPSAAVAAEPSIRELSGLTSWSL
GTIERSVSRLVNGHSVTGYPALTDEGTTAGLRVFQNEDEALVSHRAGVIRLLALRIPSPD
RYVLEHLSNSEKLTFSQNPHGKVTDLIADCTLAAIDKLIPEELPFTEAEFDALYEASRAE
LIDTVFAVVAVVERILASARRIETQLKGSTSLALISALNDVRAQLDGLVYAGFISRTGYA
QLSQLPRFLVAIEKRLEKLPTNVQRDGLNMAAVQRLEDEYDDAVAALAAGRSVPQSLRKV
RWMLEELRVSLFAVELGTAYSVSEKRIRQAMSQALS
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgacaatcacatacccgcccgagcttccggtatctgcccgccgcgaggagcta
atggcggcaatacgagaccaccaagtggtgatcatcgctggtgagaccggttcgggcaaa
acaacacagatccccaaaatgtgtcttgaactcggcctaactgagcctggtaaagacggt
aagccccggctcattgggcatacccagcctcgtcgacttgctgctcgcacagttgccgag
cgaattgccgccgaacttgacgtaaagatcggcgaagaggtcggcttccaggtccgtttc
accggtgaagtttcccgacaaactaaagtcaaagtaatgactgacggcattttgttggcc
gaaattcagcgcgacaaactgctgcaccggtactccacgctcattattgacgaggcccac
gaacgcagcctgaacatcgacttcattcttggctacttgcgccagatcctgcccaagcgc
ccagatctcaagatcatcatcacctccgcaaccattgatccggaacgctttgcccagcat
tttgcgattgataatgtgcccgcaccaatcgaagaggtatcagggcgcacttacccagtg
gagatccgctaccggccgcttgacggtagcgatggcgaacctgccgagcagagcgaggac
gactccgaagataaggatccactcgacgcggtctgcgacgccgtggaagaactttccggc
gaagcccctggcgatgtactgatctttttctccggcgagcgcgaaattcgggatgcggct
gaggcgctacgcgggcgctttgcgcatcatccccggctacgcgaggcagagatcttgcca
ctgtttgcgcgattgtcgctggccgagcagcacgcggttttcagcccgggatcgcgccgg
cggattgtgctcgctaccaacgtggctgagacctcgctgacggtacccggcattaaatac
gtgatcgacactggtacggccagaatctcgcgctattcgcaccgaaccaaagtccagcgc
ctgccgatcgaacgcatttcgcaggccagcgcgaatcaacgtgcgggtcgttgcgggcgc
gtctctgacggtatctgcatccggctctattcggaggcggatttccagggccgccgcgaa
tttactgacccggagatcctacgtaccaacctcgccgcggtgatcttacaaatgagtgcc
atcggggtggcgcgcgagcccaaagatgttgcctctttcccgttcgtcgagccgccagac
gcgaaagcgattgccgacggcgtcgcgctgttgagcgagttgggcgcattgcagcccgac
ggcggcatctcccccgtgggacgccagttggcacagttgccggtggacccgcgtttgggc
cggatgattgtggaatcgggcaagcgtggctgtgctcgcgaagtgatgattctggcggcc
gctttgactattcaggatccgcgcgagcgccctaccgaaaagcggcaaattgccgatgaa
aaacataagcggtttagcgatgagaactctgatttcaccggctttttaaacctgtggcga
tatctacaggagaaacaaaaggaactctccagcactgccttccgccggctttgcaaggct
gagttcatcaattacctgcgcgtccgcgaatggcaagatctttttgcgcaactgcgccaa
ttggctaagccgctgaacatcacgttgagcaccggtgaagtggatcccgttgggctacat
attccggtgcaccaatcgcttttggccggcttgctcagtcatcttggtttgttcgatgat
cgtaaacgcgaatacgccggtgcccgtggtagccgctttgcgatcttcccgggatcggcg
ttgttcaagaagaaccccgattgggtcatgagcgcggagttggttgaaacttctaggctt
tgggcgagggtaaatgcccgaatcgatccaatctgggccgaagaagtggctgcaggcctg
gtgaagcgaagttactctgagccgcactggtccaagcgcaatggctccgtgatggcctac
gaaaaggtgacgctgttcggcgtgccgatcgttgcgcagcgccgcataaactacggtcgt
attgatgcaccgctttcgcgcgaattgtttattcggcatgcgttggtagaaggcgattgg
cgtacgcaccacaagttcttccaccgcaatcagtcggtgttggccgaagttgaagaacta
gaaactcgaatgcgccgtcgtgatttacgcgtcgatgatgaaacgctttttgaattttac
gatgcgcgggtgggcgcggaggttgtctccgaacggcacttcgacaaatggtggaagagc
gcccggcatgagaatcccacgctgttagattttgatcctggcgtagtgatgaccgaggac
gccgatcttgacgagaccgcatacccgaagtcgattcggcacggcgagtttgagcttgcg
ctgagttacgaatttcagccgtcgtcacaatatttggctgccgggacgccagtcaacgac
tctgacggcgtgactgtaacggttcccgtactgttcctcaatcagctcgaggatgcgcca
ttcaagtggcagattccgggcttgcgagctgagttagtcacggcgctgatcaagtcgctg
cccaaaccggtgcggaagaacttcgtgccagcgcccgacgtcggcaggcaagcggccaca
gccttagctgcagatttggatccgagccaggatgatttagaatcatcgctcgagttggcc
ttgcgtcggctgcgtggacacgtcatcccgccaggttcctggaattgggacgcggtgcca
gttcatttacgcatgacgttccaggtggtcgattcagcaggaaagatcttagacaaagga
aaagatctcgccgctctacaggaatcgctcgccggtgctaccaggcgggcgattgcggaa
tcattgggcgcaatgccgaaaactgctgcgcccaaaaatcccgcacaacgcggtccatct
gcggccgttgctgcagagccctcgattcgcgagctcagcggcttgactagctggagtctg
ggcacaatagaacggtcagtgagtcggcttgtcaacggtcactcagtaaccggatatcca
gctttaactgatgaaggcaccaccgctggcttgcgggtatttcagaacgaagacgaagct
ctggtctctcatcgagcgggcgtcattcggttactggccttgcgaatcccgtcgccagac
cgctacgttctggagcatttgagtaactcggagaagctgaccttcagtcaaaatccgcac
ggcaaagtgacagatctgattgctgattgcaccttggctgcgattgacaaactgatcccg
gaagagcttccgttcaccgaagccgagtttgatgcgctttacgaggcgagccgagccgag
ttgatcgataccgtgttcgccgtagtcgccgtcgtcgagcggattttggcgagcgctcga
cggattgagacgcagctcaagggaagcaccagcctggccctaatcagcgctttgaacgat
gttcgcgcccagttggatggactggtttatgccggattcatttcccggaccgggtacgcg
caattgagccagctaccccgttttctggtagctattgaaaagcgtttggagaagttgcca
acgaacgtacagcgcgatggtctcaatatggcggctgtacaacgtctcgaagacgaatat
gacgacgccgttgcggcacttgcggccggccgatcggttccgcagagcttacgaaaagtg
cgctggatgcttgaagaactaagggtttcgctttttgccgttgagcttggtaccgcgtat
tcggtctcggagaaacgaatacgccaggcgatgtcccaagcgctcagctaa
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