Renibacterium salmoninarum: RSal33209_1432
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Entry
RSal33209_1432 CDS
T00641
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rsa
Renibacterium salmoninarum
Pathway
rsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSal33209_1432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsa03021
]
RSal33209_1432
03019 Messenger RNA biogenesis [BR:
rsa03019
]
RSal33209_1432
Transcription machinery [BR:
rsa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RSal33209_1432
Messenger RNA biogenesis [BR:
rsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RSal33209_1432
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ABY23168
UniProt:
A9WNB2
LinkDB
All DBs
Position
1222482..1224677
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AA seq
731 aa
AA seq
DB search
MRFHGRHEIGIEGEGSFVTETTSLVTGMDHAESASSEAPAKSNGLAGLKLAQLQALAGQL
GITGGSRMRKGDLVTAISAHQRGSSVADRKTQPKNEQAKATETASANGSNGAQPAAETPQ
TEAAPARRGRSRRAASSGVVSTEPAAVETVAVDAPAQSESTNEPVANEGGSRRQRGRNRR
ADDTNTAAEAASPSENAAEGAAQDSVQKESGQNRNDNRQRQDNQNNGQNNNRRNDDEEGR
GNGRNDRRNRNRNRNRNDRDGEGEGSNRVEGNTRNEGNQRNENNSRNERADRNSGNDRNE
GNARNDRNNRNDRNDRNDRFRDRNDRRRNRNQGPDVDDVEVTEDDVLLPVAGILDLLENY
AFVRTSGYLPGSNDVYVSLSQVKKYNLRKGDAVVGAIRAPREGEENRQQSQRQKFNALVQ
ITSINGKTPEELKDRVDFSKLVPLYPSERLRLETDPKKIGPRVIDLIAPIGKGQRGLIVS
PPKAGKTLILQAIADAITINNPEVHLMMVLVDERPEEVTDMQRTVLGEVIASTFDRPADD
HTQVAELSIERAKRLVEMGMDVVVLLDSMTRLGRAYNNSAPSSGRILSGGVDAAALYPPK
RFFGAARNIENGGSLTILATALVETGSKADEVIFEEFKGTGNMELRLSRNLADKRIFPAV
DVNASSTRREENLLSPEEVHIMWKLRRVLSGLEQQQSLELLTSKLRETQSNVEFLMQIQK
TTLGSKSDDDR
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttcatggacgccatgaaatcggtatcgagggggaaggatccttcgtgacagaa
accaccagcctggtaacaggcatggaccatgccgaatctgcctcatctgaggctccggca
aaatcaaatggacttgccggtttgaagctggcgcagctgcaggctcttgccggtcagcta
ggaattaccggcggttcgcggatgcgcaagggtgacctagtcactgcgatttccgctcac
cagcgcggctcttcggttgcagaccgaaagacccagccaaagaacgaacaagcaaaggca
acggaaaccgcctcagctaacggttcgaatggcgcgcagcctgccgcagaaacaccgcaa
actgaagcggctcctgctcgtcgtggccgcagccgccgagcagctagcagcggagtagta
agcaccgaaccggccgcagtcgagactgttgctgttgatgcacctgctcagagcgaatca
accaacgagccagttgccaacgagggcggctcacgtcgccagcgcggacgtaaccgtcgt
gcagatgatacgaacaccgccgctgaggcagcttcgccgtctgagaatgccgctgaaggt
gctgcccaggattccgtgcaaaaggagtccggccaaaaccgcaacgacaaccgtcagcgc
caggataatcagaacaacggccagaataacaaccgccgaaatgacgatgaagaaggtcgc
ggtaacggccgcaatgatcgtcgcaatcgcaatcgcaatcgaaatcgcaatgaccgcgat
ggcgaaggcgaaggcagcaaccgggttgagggtaatacccgcaacgaaggtaaccagcgc
aacgagaacaattcgcgcaacgagcgtgccgaccgcaatagcggtaatgatcgcaatgag
ggcaatgcccgcaacgatcgcaataaccgcaacgatcgcaatgatcgtaacgaccgcttc
cgcgaccgtaatgatcgccgtcggaatcgcaatcagggtcccgacgttgacgacgtcgag
gtcactgaggatgatgtcctgttgccagtagctggcattttggaccttctggaaaactac
gcttttgtccgtacctcgggctatttgccaggttccaatgacgtttatgtctcgctgtcg
caggttaagaagtacaacctacgcaagggtgacgccgtcgttggcgcaattcgggctccg
cgcgaaggtgaagagaaccgtcagcagagccaacggcagaagttcaacgccttggtccag
atcaccagcatcaacggcaaaacgccagaagagctgaaagatcgcgttgatttctccaag
ttggtgccgttgtacccctcggagcgcctgcgcctggaaaccgatccgaagaagattggt
ccccgcgttatcgacttgatcgcgccgatcggtaagggccagcgtggtttgattgtttcg
ccgcctaaggccggtaagaccttgattttgcaggcaatcgctgatgcaatcacgatcaat
aaccctgaagtacacctgatgatggtgctcgtggacgaacgtcctgaagaggtcaccgat
atgcagcgcacggtactgggcgaagttatcgcctcgaccttcgaccggccagcggatgac
cacactcaggtcgctgagctttcaatcgaacgtgctaagcgcctcgtcgaaatgggcatg
gacgttgttgtgctcctcgactcgatgacccgtttgggccgtgcctacaacaactcggcg
ccgtcttctggacgtattctctccggtggtgtggacgctgctgcgctctacccgcccaag
cgcttcttcggtgctgcacgtaacatcgaaaatggtggctcgctgaccattttggcaact
gccctggtggagaccgggtctaaggccgatgaggtgatctttgaggaattcaagggcact
ggcaacatggaactccggttgtccagaaatcttgcagacaagcgtattttcccggcagtg
gatgtcaacgcatccagtactcgccgcgaagaaaatctgctctcgccggaagaagtccac
attatgtggaagctccgtcgggtcctttcggggctggaacagcagcagtcacttgaattg
cttacctccaagctccgcgaaactcagagcaacgtcgaattcttgatgcagatccaaaag
accactttgggttcgaagtccgacgacgacagatag
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