Renibacterium salmoninarum: RSal33209_1774
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Entry
RSal33209_1774 CDS
T00641
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rsa
Renibacterium salmoninarum
Pathway
rsa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RSal33209_1774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsa03400
]
RSal33209_1774
Enzymes [BR:
rsa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RSal33209_1774
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RSal33209_1774
DNA repair and recombination proteins [BR:
rsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RSal33209_1774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
HI0933_like_1st
Mitofissin
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ABY23509
UniProt:
A9WMX8
LinkDB
All DBs
Position
complement(1540483..1541409)
Genome browser
AA seq
308 aa
AA seq
DB search
MPELPEVEVVRRGLQKLVVGRTIENVQVLDPRSIRRHLLGVEDFRAQLAGNRIGSVSRRG
KFLWLSLFYPADGHATGTALVTHLGMSGQMLMQDPEHADEKHLKVRIDFGPDDDLAKELR
FVDQRIFGGMFVSELVPTADGLPGGLGDDQPWIAAEAAHIAKDPLDPNFSLSDFANLLKG
SKIGIKRVLLDQARISGVGNIYADESLWASSLHYATPAGQLSFTQLDELIRNVRKVMEAS
LAVGGTTFDSLYVNVNGASGYFERSLNVYGRENKPCYRCQDNGLLTLIRRAPFMNRSSYL
CPVCQPKP
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgcccgaggttgaggttgttcgtcgcgggctgcagaaattggttgttggc
cgcactatcgagaacgttcaagttctcgatccgcgctcgattcgccgccatctgctaggg
gtcgaggacttccgtgcccaattggctggaaatcgcatcggttcggtttcccgacgcggg
aagttcctgtggctgtcgctcttttatccggcagacgggcacgctactgggactgcgctg
gtgacccatctgggcatgagcgggcaaatgctcatgcaagacccagagcatgccgatgaa
aaacatctcaaggtgcggatagattttggccctgatgacgatctggctaaagaactgcgt
tttgtggatcagcggatcttcggtggcatgtttgtctccgaactagtgccgacggctgac
gggttgccgggcggcttaggtgatgaccagccctggatcgccgcggaggctgcgcatatt
gcgaaggatccgcttgacccgaatttttcactttcggactttgcaaatctgctcaagggt
agcaagatcggcatcaagcgggtgctgctcgatcaggcccggatttccggggttggaaat
atctacgcggatgaatcgctctgggcaagctctttgcactatgccacgccagctgggcag
ctgagcttcacgcagcttgacgagctaatccgcaatgtacgcaaggtcatggaagcttcg
ttggccgtgggcggtacaacttttgactcgctctatgtgaacgtcaatggcgcttccggt
tacttcgaacggtcattgaatgtctatggccgggagaataagccctgctatcgctgccaa
gataatggtcttttgactttgatccggcgtgcaccgttcatgaatcgctcctcttatctg
tgcccggtgtgccagcccaaaccgtga
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