Rhipicephalus sanguineus (brown dog tick): 119373666
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Entry
119373666 CDS
T07382
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119373666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsan03021
]
119373666
03019 Messenger RNA biogenesis [BR:
rsan03019
]
119373666
Transcription machinery [BR:
rsan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119373666
Messenger RNA biogenesis [BR:
rsan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
119373666
U7-dependent histone pre-mRNA processing factors
119373666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
DUF7879
Motif
Other DBs
NCBI-GeneID:
119373666
NCBI-ProteinID:
XP_037499654
LinkDB
All DBs
Position
11:56618770..56662555
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AA seq
1173 aa
AA seq
DB search
MATKKKALEMRRSTAAQFFMDEEQVEQKSTSDRVVELINFSSLHHSIKDHHKVNNLRQVQ
ELIVYKEPDLLDNFLDEMLAFQNDRSSEVRKFVVGFIEEACKQDPDIFPKVLVNLRMMFR
DEAVAVQKRVIQATTQLYKVALRWICQAKKVDDLMETSWEYIRSLKNDIVSLLDCDNDGI
RTHTIKFMEMLVILQTYPDGDSPKKTGNDFALDDVPLMLKFIKPRKLEEEAKQVFDALVV
FHGTPHISSINLMTCMQALVLIAKHRSEFMSRVIQALESLHANLPPTLAKSQVSSVRKHL
KLQLLILMKHPAAVDYHGQISTLLTDLGATPQEISKSMPKPDEIKKRARLIEEGTTAAPG
GASAPPSVKRIKLEAEEEEEEKEEEDTSPISKAATNTAIDITAEDLVPRLTTVNVTDVVL
VSMLSLPEVMPAHFQASYTPIAVAGTETQIKHLARLISTQMTALGLGKGVEEMIAKAKEQ
QQQDEEAMQTDEAAMPKQTIQTLLGGTTADAKKKEAKNTILVPTGFEPKSRRLRQLNLSD
ITRPLSDEEMTQMLVSTVRRILDAGRESRAHNTSISPVQVKILAGLATQFGGEISAMLKG
YILEDLRSHVDIALAWLYEEYAQLQGFLQSGTGMEKSTSSDSYVHCLTNLLVDILQKCES
RDRDALFSRFFLEIPSITSEALIILKQYCQNESTVANGLSILRSLVDYRPPGQIEYLQKL
LELTVSQNQEVRLQAAKHAKQLHERGNFRPIIEDFALMYLRYLLEPSPPQHLFHGCHVWT
EDNTKICMQLYINLLPVNHKLIHDLAVVYVGAIAEIKRTILRGLEGPVKGMGMSSPELLL
LVENCPKGAETLVTRIIHILTDKTPPSSELVARVRDLYHKRVSDVRFLIPVLNGLSKKEV
IAALPKLIKLNPIVVKEVFNRLLGSHVESTANFTSPVSPAELLVALHNIDPSKCDVKTVI
KATSLCFAEKHIYTQEVLAVVMQQLMEQSPLPTLLMRTVIQSLSLYPRLLGFIMNILQRL
ITKQVWKQKKVWEGFIKCCQRTKPQSLQVLLQLPAEQLRNVFQVSPDLQQPLVQHVSAFT
DHQRAHIPESILEVLNLGRPKADSDKSKSADKDIALKMKKDSSRESRDSREARDSRDYSG
SRSERDSWRPSSNTKIRLSTSEDSSGALQELDA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaagaagaaggcgctcgaaatgcgccgtagcacggcggcgcagtttttcatg
gacgaagaacaagttgaacagaaatccaccagcgaccgggttgtcgaactcatcaacttt
tcctcattgcatcatagtatcaaggaccatcacaaagtgaacaatcttcgccaggttcag
gagctcatagtctacaaggagccggacctactcgacaactttctcgatgaaatgctcgcg
ttccaaaacgaccggtcatcggaggtccgaaagtttgtcgtgggattcatagaggaagca
tgcaaacaagatccggacatcttcccaaaggtcctggtcaatctacgcatgatgtttcgg
gacgaagcagtcgcggtgcagaagagggtcattcaggccaccacgcagctgtacaaagtg
gcactacgatggatatgccaggccaaaaaagttgatgatctcatggaaacatcttgggag
tacatcagaagcctcaagaacgacattgtgtctcttctggactgtgacaatgacggtatc
cggacgcataccatcaagtttatggaaatgctagtcatactgcaaacttacccggacggt
gacagtccaaagaaaacgggcaacgactttgctctggacgacgttccattgatgctcaag
ttcatcaagcctcgcaagttggaagaggaggcaaagcaagtcttcgacgcactcgtcgtg
ttccatgggactccgcacatctcaagcatcaacttgatgacctgtatgcaagctctggtg
cttattgcgaagcacaggtcggagttcatgtcaagagtcattcaggcactggaatcgctt
cacgctaacctgccaccaactttggccaagtcccaagtgagcagcgtgcgaaagcatctc
aagcttcaattactaatcctcatgaagcaccccgctgctgttgactatcatgggcaaatt
agtaccctcctaaccgatcttggagcaacacctcaggagatctcaaagagcatgcccaag
ccggacgagatcaaaaagcgagcacgcctcatagaggaaggcacaacagccgcacctgga
ggtgcctcagcaccgcccagtgtcaagcgaataaaacttgaggccgaagaagaggaggaa
gagaaagaggaggaggacacctcaccaatatcgaaggcagccaccaacacggccatcgac
atcactgctgaagatctggtgccgcggctgacgaccgtcaacgtcaccgacgtcgtcctt
gtgagcatgctttcgttgccagaggtaatgccggcgcatttccaagcatcctacactccc
attgctgtggccggcacagagacccagatcaagcatttggcgaggctcatctcgacccag
atgactgccttgggattgggcaagggagtggaggagatgattgccaaagccaaggagcag
cagcagcaggacgaggaggccatgcaaacagacgaagcagcaatgccaaagcaaacaatt
cagactctgctaggtggaaccacagcagatgccaagaagaaagaggccaagaacaccatt
cttgttcctacaggctttgagcctaaaagccgaagactccggcagctgaacttgtcagac
atcacgaggcccctttccgacgaggaaatgacgcagatgctcgtctctacggttcggagg
attctcgacgctggccgtgaatcgagggcacacaacaccagtatatcgccggtccaagtt
aagattcttgctggattggcgacccagtttggaggagaaatcagcgcaatgctcaagggg
tacatcttggaagaccttcgctcgcacgttgacatcgccctggcctggctgtacgaggaa
tatgcgcagttacaggggttcctgcagagcggcactggcatggaaaagagcactagcagc
gactcatacgttcactgcctgaccaacttgctcgtggatattctgcagaagtgcgagtca
cgggaccgagatgcgttgttcagccgcttctttctggagataccatccatcacatcagag
gcgctcatcattctgaagcagtactgccaaaacgagtccacagtggccaacggtctgtcg
atcctgaggtcgctggtggactaccggcctccgggacagatcgagtacctgcagaagctg
ctcgagctgactgtctctcagaatcaagaagtgcggctgcaggcagccaagcatgccaag
cagcttcatgaacgtggaaattttaggccaatcattgaggactttgcattgatgtacctg
aggtatctcctggagccgtcacctccccagcacttgttccatggctgtcatgtgtggacg
gaagacaacacgaagatctgcatgcaactgtacataaaccttctgcctgtcaatcacaag
ctgatccatgatctcgctgttgtctatgtgggcgccattgctgaaatcaagaggaccatt
ctgcgtggccttgagggacctgtcaaaggcatgggcatgtcctcccccgaactgctgctg
ctggtggagaactgcccgaaaggggccgagacgctcgtcactcgcatcatccacattctc
accgacaaaactccgccatcatcagaattagtggccagggtccgagacctttaccacaag
cgcgtgtctgacgtgcgtttcttgataccagtgctgaacggcctttcaaagaaagaagtg
attgcagcactccccaagctcatcaagctgaatcccatagttgtgaaagaggtttttaat
cgcctgctcggtagtcacgttgaatcaacggcaaacttcacaagcccagtgtctcctgct
gagctgctggtggccctacataacatcgatccttccaagtgtgacgtcaaaacagtcatc
aaagccacatctctgtgctttgctgagaagcacatctacacgcaagaggttctggctgtg
gtcatgcagcagctgatggagcagagccccctgcccaccctgctgatgcgcacggtcatc
cagtctctcagcttgtacccaagactcttgggattcatcatgaacatcttgcaacgactc
atcaccaagcaggtgtggaagcagaaaaaagtatgggagggcttcatcaagtgctgccaa
cggaccaagccacagtcgctgcaggtgcttcttcagctgcccgccgagcagctgcgaaat
gtgttccaggtcagccccgaccttcagcaaccactcgtgcagcacgtcagcgccttcacc
gaccaccagagagcacacatacccgagtctatattggaggtgctcaatctaggcaggccc
aaggctgacagtgataagtcaaagtcggcagataaagatatcgccctaaagatgaaaaaa
gactcatctagagaatcaagagattccagggaagcgagagactcgagggattacagtggc
agtcgctcggagagggacagttggcggccttcaagcaacaccaagatcagactgtcgaca
tcagaagacagcagtggggcactgcaggagctcgacgcgtaa
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integrated database retrieval system
