Rhipicephalus sanguineus (brown dog tick): 119374037
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Entry
119374037 CDS
T07382
Name
(RefSeq) LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119374037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsan03041
]
119374037
Enzymes [BR:
rsan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119374037
Spliceosome [BR:
rsan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119374037
Complex C
U5 SnRNP specific factors
119374037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SLFN-g3_helicase
TcA_RBD
Motif
Other DBs
NCBI-GeneID:
119374037
NCBI-ProteinID:
XP_037500024
LinkDB
All DBs
Position
11:34838831..34846511
Genome browser
AA seq
2149 aa
AA seq
DB search
MADVAARSLQYEYKANSNLVLQADTRLIERRPRDEATGEVVSLVGKLEGSRMGDRYQRTK
PSKDERKSKKQQQQQQKKASDESRYDAAKLKGQSLLSEGVEDVVGILYRPKTTETKQTYE
VLLSFIQEALGDQPRDILCGAADEILAVLKSDRIKEGERRKETEALLGPVAEERFALLVN
LCKKITDYGVDEKQPVVEENIDETYGVNVQFEESDEEEDEIVGEVREDDSNDEAEGEEAH
LDTTLQATNLIAGREGGRKGSKSGLHPREIDAYWLQRKLSKFYDDPVVAQTKAGEVLDIL
KTAVDDRDVENQLVLLLGFNQFDFIKILRQHRQMILYCTLLASSQSATERSKLRDKMQAD
PELERILRQLENTDKDDVVQEERERRAQARQARVNAELEPMDMDEDSIVPQMSQCKMLDL
EDLSFQHGSHFMANKRCQLPDGSFRKQRKGYEEIHVPALKPKPFDTNETLVSVDKLPKYA
QPAFEGFRSLNRIQSRLHKAALESDENLLLCAPTGAGKTNVALLCMMREIGKHINPDGSI
NGDEFKIIYVAPMRSLVQEMVGNFSKRLNSYNITVSELTGDHQLTREQINATQVIVCTPE
KWDIITRKGGERTYTQLVRLMIFDEIHLLHDERGPVLEALVARTIRNIEMTQEDVRLVGL
SATLPNYEDVATFLRVNPAKGLFFFDNSFRPVPLEQQYIGITEKKAIKRFQLMNEILYEK
VIDNAGKNQILIFVHSRKETGKTARAVRDMCLEKDTLGHFLREGSASTEVLRSEAEQVKN
LELKDLLPYGFGIHHAGMSRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVIKGT
QIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIES
QLISKLPDVLNAEIVLGNIQNVKDACTWLGYTYLYIRMLRAPTLYGISHDEIKADPLLEQ
RRADLIFTAAAQLEKSNLLRFDKKSGNMQVTELGRIASYYYCTYETMATYNQLLKPTLSE
IELFKVFSLSGEFRNITIREEEKLELQKLMERVPIPIKESMEEPTAKVNVLLQAYISQLK
LEGLALMADMVYVTQSAARLMRAIFEIVLHRGWAQLTDKALSLCKMIDKRMWQSMTPLRQ
FRKVPDEVIKKVEKKNFPWERLYDLGVSEIGELLRMPKLGKLVHRYVHQFPKLELAAHIQ
PITRSMLRVELTITPDFQWDEKIHGTSEAFWILVEDVDSEVILHHEYFLLKSKFSQDEHL
IKFFVPVFEPLPPQYFIRIVSDRWINAETQLPVSFRHLILPEKYPPPTELLDLQPLPVSA
LRNPTFEALYKDKFPFFNPIQTQVFNAIYSSDDNVFVGAPTGSGKTICAEFAILRLFSQV
PEGRCVYVTPNEALAEIIYSDWTQKFSLQLNKKVVILTGETGTDLKLLAKGNIIIGTPEK
WDVLSRRWKQRKNVQNINLFIVDELHLVGGEDGPVLEVICSRMRYISSQIERQIRILALS
SSLANARDIGQWLGANVNSTFNFHPNVRPVLLELHIQGFNITHNASRLLSMSKPVYQGIM
RHSPRKPVIVFVPSRKQTRLTAIDILTYSASEGQASKFLHCTEDDLKPFLDKITDKTLKE
TLSNGVAYLHEGLSPADQRLVEQLFDSGAIQVVVVSRSLCWALSLSAHLVIIMDTQYYNG
KIHAYEDYPVTDVLQMVGRANRPLVDEDGKCLLLCQSSKKDFFKKFLYEPLPVESHLDHC
LHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVTHRHLSDHLSDLVEN
TLNDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLLEIISS
AAEYENIPIRHHEDNILRQLYNRLPHKLTNPKFSDPHVKTNLLLQAHLSRMQLSAELQSD
TEDILSKAIRLIQACVDVLSSNGWLTPALAAMELAQMVTQALWNKDSYLKQLPHFTADIV
KRCQEHGVETVFDIMELEDEDRNKLLQMTDSQMADVAKFCNRYPNIELTYEIQGKDHIRC
GSAVNIVVQLEREDEVVGPVIAPMFPQKREEGWWVVIGESKSNSLISIKRLSLQQKAKVK
LDFVAPAPGDHTYTLYYMSDSYMGCDQEYRFTIHVGQMESRKRNDSDSD
NT seq
6450 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtcgccgcacgttcgcttcagtacgagtacaaagcaaactccaaccttgtg
ctccaagccgacactcgtctcatcgaacgtcggccccgcgatgaggcgaccggcgaagtg
gtatcgcttgtcgggaagctcgagggctcccgcatgggagaccgctaccagcgcaccaaa
cctagcaaagacgaacgcaagtccaagaagcagcagcagcaacagcagaagaaggcgtcc
gacgaaagccgctacgacgccgccaagctgaaaggccagtcactgctctcggagggcgtc
gaagatgtcgtcggcatcctgtaccgaccgaagactacggagaccaagcagacttacgaa
gtcctgctgagcttcatccaagaggcgttgggcgaccagcctcgtgacatcctctgcggt
gccgccgatgaaatcctcgcggtcctcaagagcgaccgcatcaaggaaggagaacgtcgc
aaggagaccgaggcgctgctgggacctgtggccgaggaacggttcgcccttctcgtgaac
ttgtgcaagaagatcaccgattacggcgtggacgaaaaacaacccgtcgtggaggaaaac
atcgacgaaacttatggcgtcaacgtgcagttcgaggagtccgacgaggaagaggatgag
atcgtgggcgaggtgcgcgaggatgactcgaacgacgaggctgaaggcgaagaggcccac
ctggacactactctgcaggcgaccaacctaatagctggccgcgaaggaggacgcaaggga
tccaagagcgggttgcacccgcgagagatcgacgcatattggctgcagcgaaagctgagc
aagttctatgatgaccccgtcgtggctcagacaaaggctggcgaagtccttgacatcctc
aagacggctgtcgacgatcgcgatgtcgagaaccaactggtgttgcttctcggattcaac
cagttcgacttcatcaaaattctgcggcagcaccgacagatgatcctctactgcactctc
ttggcttcatcccagagcgccactgagcgatcaaagttacgtgacaagatgcaggcagac
cccgagctggagcgaatcctgaggcagctcgaaaacaccgacaaggacgacgtagtgcag
gaggagcgtgagcggcgggcacaggcccggcaggctcgagtcaacgccgagttggagccc
atggacatggacgaagacagcattgtcccccagatgtctcagtgcaagatgctggacctg
gaagacctgtcgttccagcatggcagccacttcatggccaacaaacggtgccagttgccc
gacggatcgttccgcaagcagcgtaagggctacgaagagattcacgttcccgccctcaag
cccaagccatttgacacgaatgagacgcttgtctcggtcgataagctgccaaagtatgcc
cagcccgctttcgaggggttccgcagcctcaaccgaattcagagtcgtttgcacaaagct
gcgctagagtccgacgaaaacctcctgctctgtgccccgactggtgctggcaagaccaac
gtagcccttctttgcatgatgcgggagattggcaagcacatcaacccggacggctccatc
aacggggacgagttcaagatcatctacgtcgccccgatgcgttccctggtgcaggagatg
gtgggaaacttcagcaagcgactcaactcgtacaacataaccgtttccgagttgacaggc
gaccaccagctgacgagggagcagatcaatgcaacccaggtgattgtgtgcacgcccgag
aaatgggacatcatcaccaggaagggaggggagcgcacctacactcaacttgtgcggctt
atgatcttcgacgagattcacctgctccacgacgagcgaggtccggtgttggaggccctc
gtggcgaggaccatccgaaacattgagatgacgcaggaggatgtccgacttgtcggtctc
agtgccaccctgcccaactacgaggacgtcgccacattcctgagggttaacccggccaag
ggactgttcttctttgacaacagcttccggcctgtgccactcgagcagcagtacattgga
atcacggaaaaaaaggccatcaagcgtttccagctgatgaatgaaattctctatgagaag
gtcatcgacaacgccggaaagaaccagattctcatttttgtccactctcgaaaagaaaca
gggaagactgccagagctgtgcgagacatgtgtcttgagaaagacacgttgggacacttc
ctccgagagggttctgcgtctacagaagtgcttcggtctgaggcagaacaggtgaaaaac
ctcgagctgaaagacctgctgccatatggcttcggtatacatcatgctggcatgagccgc
gttgaccgtacacttgtggaggacttgtttgccgatcgccacattcaggtgctggtgtcg
acagctacactcgcgtggggtgtcaaccttccagcccacaccgttgtcatcaagggcacc
cagatatacaacccggagaagggacgctgggtcgaactgggtgccctggacgttctccaa
atgcttggcagagctgggcgaccccagtatgacactaagggcgaaggcatcctcatcaca
aatcacagtgagctgcagtactacctttcccttctcaaccagcagctgccgattgagagc
cagcttatcagcaaacttcctgatgtgctcaatgctgaaatcgtcctgggcaacattcag
aatgtgaaagatgcatgtacttggctgggatacacgtacctctacatccgtatgcttcgt
gcaccaacactctacggcatttcacacgatgagatcaaggcggaccctttgctggaacag
aggcgtgccgacctgatctttacggccgcagctcaactggagaagagcaacttgctccgc
ttcgacaagaagtcgggcaacatgcaggttacagagcttggcaggattgccagctactac
tactgcacctatgagacaatggcaacatacaaccagctgctcaaacccactttgagcgag
atcgagctgttcaaggtgttttcgctgtctggcgaattccggaacatcaccatccgtgag
gaagagaagcttgagcttcagaagctgatggagcgggtcccaatccccatcaaagagagc
atggaagagccgacagccaaagtgaatgtcctcttgcaggcatacatttcccagctgaaa
ctggagggccttgccttgatggccgatatggtgtacgtgacacagagcgctgcacgtctg
atgcgtgccatcttcgaaattgtgcttcaccgtggctgggcacagttgacagacaaggcg
ctaagtctgtgcaagatgattgacaagcgcatgtggcagtccatgacgcctttgcggcag
ttccggaaggttcccgatgaggttatcaagaaggttgaaaagaagaactttccttgggaa
cgcctgtacgacctcggcgtcagtgaaatcggtgagctcctgagaatgcccaaactgggg
aagctggtgcaccgatacgttcaccagtttcccaaactggagctggctgcacacatccag
cccatcacccgatccatgctgcgcgtggaactgaccattacgccggacttccagtgggac
gagaagatccacggcacgtccgaggcattctggattctcgttgaagacgtggactcagag
gtgatcctccaccatgagtatttcctgcttaagagcaagttctcccaggatgagcacctc
attaaattcttcgttcctgtctttgagccgctgccgccgcagtacttcatacgcattgtg
tcggaccggtggatcaatgcggaaacccagcttccagtctcattccggcacctgatactc
ccggaaaagtaccctccacccacagaactgctagatctgcagcccttgcccgtgtctgcc
ttgcggaacccgacattcgaggctctgtacaaggacaagtttcctttcttcaatccaatc
cagactcaagtcttcaatgccatctacagcagtgatgacaacgtctttgtcggcgctccg
acgggcagcggcaagaccatctgtgcagagtttgccattttgcgcctgttctctcaggtg
ccggaagggcgctgtgtgtacgtgactccaaatgaagctctcgccgagatcatatattcg
gactggactcagaagttctccctgcagttgaacaagaaggtcgtgatcctcaccggcgag
acaggcactgacctgaagctgcttgccaagggcaacattatcattgggacccctgaaaag
tgggacgtcctttcacggaggtggaagcaacgcaagaatgtccagaacatcaacctgttc
atcgtggacgagctgcacttggtcggcggagaggacggtcccgtgctcgaggtgatctgc
tcccgaatgcgctacatctcctctcagatagagcgtcagattcgcatactggcactcagt
tcctctctggccaacgcccgagacattggccagtggcttggagccaacgtcaactcgacc
ttcaacttccatcccaatgtgaggcccgtcttgctggaactgcacatccagggcttcaac
atcacccacaatgcctcccgtctcctctccatgagtaagcctgtctaccaaggcatcatg
aggcattccccacggaagcccgtcatcgtctttgtgccgtcacgaaagcagacacgtctg
accgccatcgacatcctcacatactctgcctcggaagggcaggcctccaagttcttgcac
tgcacagaggacgacctcaagcccttcctggacaagatcacggacaaaacactgaaggag
acactgagcaacggagtggcgtacctccatgaaggcttgagcccagctgaccaacgcttg
gtggagcagcttttcgacagcggtgccatccaggttgtggtagtctcccgaagcctgtgc
tgggctttgtctctgtcagctcaccttgtcatcattatggacacgcagtactacaatggt
aaaattcacgcctatgaagactaccctgtcacagacgtcctccagatggtcggtagagct
aaccggcctctggttgacgaggacggtaagtgccttttgctgtgtcagtcgtcaaagaaa
gacttcttcaagaagttcttgtacgagccactcccggtggagagccaccttgaccactgc
ctgcatgaccatttcaatgccgagattgttaccaagaccattgagaataagcaggacgca
gtggactacctgacatggacattcctgtacaggaggatgacgcagaacccgaactactac
aacctccaaggtgtcactcaccgccacctctcggatcacctgtcagacctcgttgagaac
acgctaaacgatctcgaacaaagcaagtgcatcagcattgaagatgagatggatgttgct
cctctcaacctgggcatgattgctgcctactactacatcaactacaccacaattgagctc
ttcagcatgtcgctgaactcgaaaaccaagatccgaggccttctggagataatcagttcg
gctgcagagtacgaaaacatacccatcaggcaccacgaagacaacatcctgaggcaactg
tacaaccgactgccccacaagctcacgaatcccaagttcagcgacccgcacgtcaagacc
aacctgctcctgcaggcacacttgtcccgtatgcagctgtcggctgagcttcagtccgac
acggaagacatcctcagcaaggccatccggctcatccaggcatgcgtggatgtgctaagt
tccaatggatggctgaccccagcgctggctgccatggaactggcacagatggtcacgcag
gcgctttggaacaaggactcttacctcaagcagctgccgcacttcacggctgacatcgtc
aaacgatgccaggagcacggtgtcgagaccgtcttcgacatcatggagctcgaggatgag
gaccgcaacaaactcctccagatgaccgacagtcagatggcggacgtcgccaaattctgc
aaccggtatcccaacatcgagctcacgtacgagatccagggcaaggaccacattcggtgc
ggctctgctgtaaacattgtggtccagctggagagggaagatgaagtcgttggaccggtc
attgcccccatgttccctcagaagagagaggaaggctggtgggtggtcattggcgagtca
aagagcaactcgctcatatccatcaagagactcagcttgcagcagaaggccaaggtgaag
ctcgacttcgtggctcccgcacccggggaccacacgtatacgttgtactacatgagcgac
tcttacatggggtgcgaccaggagtacaggttcaccattcacgttggccagatggagtcg
cggaaacgtaacgacagtgacagtgattaa
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integrated database retrieval system
