Rhipicephalus sanguineus (brown dog tick): 119377166
Help
Entry
119377166 CDS
T07382
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03013
Nucleocytoplasmic transport
rsan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119377166
03015 mRNA surveillance pathway
119377166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsan03019
]
119377166
Enzymes [BR:
rsan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119377166
5.6.2.5 RNA 5'-3' helicase
119377166
Messenger RNA biogenesis [BR:
rsan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119377166
mRNA cycle factors
Common to processing body (P body) and stress granule
119377166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
UvrD-helicase
AAA_16
ATPase
DEAD
Helicase_RecD
nSTAND3
SRP54
AAA_22
AAA
Motif
Other DBs
NCBI-GeneID:
119377166
NCBI-ProteinID:
XP_037502678
LinkDB
All DBs
Position
Unknown
AA seq
1126 aa
AA seq
DB search
MSMSVDAYGPSSQTLTFLDTEEASDLLGADTQGSEFDFTDFTLPSQTQASQADGGQTQGS
RGGQLPGEVRSNGLEVAAAGQALGELTFEEDEEDQYYAKDLPEHACKYCGIHDPGCVVQC
NVCKRWFCNGRGNTSGSHMVNHLVRAKHKEVTLHRDGPLGETVLECYSCACRNVFVLGFI
PAKADSVVVLLCRHPCAAQSSLKDMNWDPDQWKPLIHDRCFLPWLVRAPLERDQLRARQV
TAQQISRLEELWKDNVDASFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKMEADYD
KKLKESQTQDNIEVRWDIGLNKKMIAYFTVAKSDTDMRLMHGDELRLRYLGELHKPWSGV
GHVIKIPDNYSEEVGIEMKTNLGVPSECTSNFVVDFVWKSTSFDRMQAALRKFAVDECSV
SAYIYHRLLGHEVEEVVMRCPLPKHFSAPQLPELNRSQVYAVKHALQRPLSLIQGPPGTG
KTVTSATVVYHLAKQSTGPVLVCAPSNIAVDQLTEKVHQTGLRVVRLCAKSREALNSPVS
FLALHNQIRSMDGHSELHKLQQLKDETGELSSADEKRYRMLKKACERELLEAADVICCTC
VGAGDPRLARFKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPLRLEVQYRMHPQLAQFPSNFFYEGSLQNGVFADERRMRGLDF
PWPQPERPMLFYACQGQEEMAGSGTSYLNRTEAALVEKICTRFLRSGVKPQQVGVITPYE
GQRAYLVQHMQFQGALHAKLYQEIEVASVDAFQGREKDLIVMSCVRSNEHQGIGFLNDPR
RLNVALTRARYGLIIVGNPKVLSKQPLWNHLLTFYKENRVLVEGPLNNLKESLIQFSKPR
KLVNTVNPGGHFMSTTVFDAREAMVPGSVYDRSSQLNGGPDWRGTGRGAWAPLKENFTET
GFGRHHDPLAYIGPAERAAANPGLPVPVGLFMNMAHVPPRFYNQHQQALQARRGAAGPAK
GPPPRRTARNQQQPPPGRRAPSGSQFNSQASQGVLSQPGGSGPLSQPGGVGGALSQLSQE
SCFLGEELRSQAEGMLSQDSSYQGDRHCFGQPPSSSTAHFAAQQPY
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgagtgtcgacgcgtacggaccgagctcgcagacgcttacattcctcgacacg
gaggaagccagcgacttgctgggagccgacacgcagggatcagagtttgatttcaccgac
tttacgcttccttcccaaactcaagcatcgcaggcagatggcgggcagacacaaggaagc
cgtggtggccagcttcctggggaggtgcgcagcaacggcttggaggtggctgcagctgga
caggccctgggggagctcacatttgaggaggatgaagaagaccagtactatgccaaggat
ctgcctgagcatgcctgcaagtactgtggcattcatgatcccgggtgcgttgttcagtgc
aatgtgtgcaagcgctggttctgcaatggccgaggcaacacgtcaggcagccacatggtg
aaccacctggtgcgagccaagcacaaggaggtgaccctacacagagatggtccacttggc
gagacagtgctcgagtgctattcatgcgcctgccgcaacgtcttcgtcctcggcttcatt
ccggctaaggcggactcggtggtcgtgctgctttgtcggcacccgtgtgctgcccagtcc
tccctcaaggacatgaactgggacccggaccagtggaagccactcattcatgaccgctgc
ttcttgccatggctggtgcgtgcacctcttgagagagaccaactgcgtgcccgccaggtg
actgcccagcagatctcgaggctcgaagagctctggaaggacaatgtggacgctagcttt
caggatctggagaagcctggtgtggatgaggaaccccagcaagtgctgctgaggtatgag
gatggctaccagtaccaaaacatctttggccccttggttaaaatggaagcagactatgac
aagaagctcaaggagtcacagacacaggacaacatagaggtccgctgggacattggcctg
aacaaaaaaatgattgcctacttcacagtggctaagtctgatacagatatgcggctgatg
catggtgatgagctacggctgcgttaccttggggaactgcacaagccgtggtctggtgta
ggccatgtcatcaagatacctgacaactacagtgaggaagtaggtattgagatgaagacc
aacttgggcgtcccatcagagtgcacctctaactttgttgttgactttgtgtggaagtcc
acatcctttgacaggatgcaggctgcactccgcaagtttgctgttgatgagtgctcggtg
tcggcgtacatctaccaccgactgctaggccacgaggtggaagaggtggtgatgcgatgc
ccactgcccaagcacttctcggcaccccagttgcccgagctgaaccgctctcaggtttat
gcagtgaagcacgcactgcagcggccgctgtcgctcatccagggcccgcccggtacgggc
aagactgtaacgtcggccactgttgtgtaccacctggccaaacagagcactgggcctgtc
ctggtatgtgcacccagcaacatcgccgtggaccagctgacggagaaagtgcaccagaca
ggcctgcgggtggtgcgcttgtgtgccaagagtagagaggccctgaactcgcccgtctcc
ttcctggcgctgcacaaccagatccgcagcatggacggccactctgagctgcacaagttg
cagcagctcaaggacgagacgggcgagctgtcgtcagccgacgagaaacggtaccgcatg
ctcaagaaggcctgtgagcgtgagctcctagaggccgcagatgtcatctgctgtacgtgt
gttggggcaggagaccctcggcttgcgcgcttcaagttccactccatcctcattgacgag
agcatgcaggccaccgagccagaatgcatggtgcctgttgtgcttggggccaaacagctg
atcctggtgggtgaccactgccagctaggccccgtggtgatgtgcaagaaggcagcacgg
gcggggctgtcgcagtcgctgtttgagcggcttgtggtgctgggtatccggcccttgcgc
ctggaagtgcagtaccgcatgcaccctcagctggcccagttcccatccaacttcttctac
gaaggctccctgcagaacggcgtgtttgccgacgagcgccgcatgcgcggtttggacttc
ccctggccacagccagagaggccgatgctcttctatgcctgtcagggccaggaggagatg
gcgggcagtggcacctcctacctgaaccgcaccgaggccgcactcgtggagaagatctgc
acacgcttcctgcgcagtggcgtcaagccgcagcaggttggcgtcatcacgccttacgag
ggccagcgggcctatttggtgcagcatatgcagttccagggggccctgcatgccaagctt
taccaggaaattgaggtggccagcgtggacgccttccaaggccgagaaaaggatctgata
gtgatgtcatgtgtacggtccaatgaacaccagggcattggatttctcaacgacccccgt
cggttaaacgtggcactgacacgtgctcgttatggtctcataattgtgggcaaccccaag
gttctatcaaagcagcctctctggaaccacctgctgaccttttacaaggagaacagggtg
ctggtcgagggtcccctaaacaacctcaaggaaagcctgattcagttcagcaagccacgc
aaactggtcaacacggtgaacccaggtggtcacttcatgagcaccactgtgtttgacgcg
cgtgaggccatggtgcctggcagtgtgtacgaccgctcgtcccagctgaacggtggacca
gactggcgaggcaccggccgaggagcctgggcacccctcaaggagaacttcactgagacc
ggttttggccggcaccacgacccattggcatacattggccctgccgagcgggcggcggcc
aatccgggcctgcccgttcctgtcgggctgttcatgaacatggcacatgttccaccacgc
ttctacaatcaacaccagcaggcactgcaggcacggcgaggcgctgctggcccggcaaag
ggtcccccaccccgccgcacagcccgcaatcagcagcagcctcctccagggcggcgggcc
ccatcaggctcacagttcaacagtcaggctagccagggagtgctgtcccagccgggtggc
agtgggccactgtcgcagccgggaggagtggggggtgccctgtcacagctgtcacaggag
agctgcttcctgggggaggagcttcgctcgcaggccgagggcatgctctcccaggactcg
tcctaccagggggaccggcactgttttggacaaccgccatcctcctccacagcccacttc
gcagcacagcagccctactga
DBGET
integrated database retrieval system
