Rhipicephalus sanguineus (brown dog tick): 119378978
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Entry
119378978 CDS
T07382
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03013
Nucleocytoplasmic transport
rsan03015
mRNA surveillance pathway
rsan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119378978
09122 Translation
03013 Nucleocytoplasmic transport
119378978
03015 mRNA surveillance pathway
119378978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsan03019
]
119378978
Messenger RNA biogenesis [BR:
rsan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119378978
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
119378978
NCBI-ProteinID:
XP_037504027
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All DBs
Position
1:complement(272208263..272284229)
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AA seq
1120 aa
AA seq
DB search
MDEVVEQVAFADAKCDDSQTPGSLDAMSETDCNSTTKESAIDEAKDGAAQFARGDEKKDQ
NSELGTELPRVTCAATSDASPGGDLPACNIDKTSEVVTMEASLSAQAGTEASGKALAESS
HEATGPNSCKNVQEESSLHSQEGAPRNCTETDADSCAEQKPSSSVNEGSNGSSSECVAKS
AEMQDPTLRTSSDTCRPERETSVQLSKESDPDVELATEPAKNEEVRTQVSITDSEISGDA
SSKGTSESSSAIAAQLKETILTVNQRSEVASVDVAKPSGGSQPKDEPVTCSSPAVPPNSS
SVEVAPSKPSTSTSCSDVDSSERDQTLDSTVNRKLPSEEVESSDCGLTSEDGVGVEDREG
SSTVSTAGEAATGTDLEGGHEATADSLDSPGHIEVGSDQEDFDEELELHPRLHRDDLDDS
GINDGTRGLEDELEDGLDEEEDDEDCLKGERQQGDGEESVDPSDLQDKVLDFDEDKRNPQ
YIPKKGAFYQHDDRMVGDEDSSEVPEEKNEDDKGARRQKKLWHDEGVWGHDMYREEEQGP
KTSAELVSIYGYDIRTELMPPRARRRRRYGRGPNKYQRNWEDEEAYTPRSGSGRGGGARG
GRRTRGGSHIGNPPFHDEDFPDLHSKPSNSENTASVQQDRAEVKPSARPAVFKGSDSTES
SSSQQEEWDHTVKGSGMTHRGWGKRPSQPPRRVPDALPRQQDCEVKENATLGHRVNRPAP
RSPVKAVEAPQISLSTGRSRAMRHLLTEHERSKRDYEALEKFAAKGELQDGDKADLKRST
AAAVTQRGGPVGSTESAAKPRRYSSLRQRPLAEAAPYTETAVVAPQLPNTQAPLPTPNQP
QPAILTAAHFQAPYTPYPDGYMLPPPGQPPAVMPTPNQPPPVMAAPSPLTSSFLPPPTGI
VSFPPQYPPPYTFPAQYAAPAPAAAPPTQTQAQKPPYYHGDIIYYNTQSQQHKQRPTPPR
RPKAAIPIVPPPDSQGTVQAAAERDSFHESVVFRPEEGKEASASQPSAVKMLQRVTAEHY
NKEASLASDHLELVMRDGNWPNIKQAHFDNDVSAAEYLRASFFASRFQKPTPCSQENMLK
AEPLRASVYDCEKANVNTNGWTQSKCPACHQPLPYMPWCS
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggttgtcgaacaagtggcgttcgccgacgcgaagtgtgacgattctcaaact
cctggaagtctcgatgcaatgtcagaaactgactgcaacagtaccacgaaagagagtgcc
attgacgaggcaaaagatggtgctgcacagtttgctagaggtgatgagaagaaggaccag
aatagtgagttgggcacggagctgcctcgtgtgacatgtgctgcaactagtgatgcgtct
cctggaggagatttgccagcatgcaatattgacaaaacctcagaggttgtaacaatggag
gcctctctctctgctcaggctggcaccgaagcctcaggtaaagcattggctgagagttca
cacgaagccacaggtcccaattcctgtaaaaacgtgcaagaggagtcatctctgcactcg
caggaaggagcaccgagaaattgtactgaaacagatgcggattcctgtgctgaacagaag
ccatcgtcatcagttaatgaggggtcgaatggttcgtcatcggaatgtgtagcaaagtct
gctgaaatgcaagatcctaccttgaggacatcgagtgacacttgtcgccctgagcgggag
acaagtgttcagttgagcaaggaaagcgatcctgatgttgagcttgccactgaacctgca
aaaaatgaggaagtacgtactcaagtgtccataacagattctgaaatttctggagatgct
tcttcgaagggcacatctgaatcgagttctgctatagcagctcaattgaaggaaaccatt
ttgacagtgaatcaaaggagtgaagttgcaagtgtggatgttgctaaaccaagtggcggt
agtcagccgaaagatgagccagttacatgctcttcaccagcagtgcctcctaatagttcc
agtgtagaggtagccccttcaaagccatctacatcaacaagctgttcagatgttgattca
tctgaacgagatcaaacattggattccactgttaacagaaaactgccttctgaagaagtt
gagagtagtgattgtggacttacctctgaagatggagtcggtgtggaggatcgagaaggc
tcaagtaccgtgtctacggctggtgaggcggctactggcacagacttggaaggtggccat
gaggccactgctgactcgctagacagtccaggccacatcgaagttggctccgatcaagag
gacttcgatgaggaacttgaattgcacccacgattacacagggatgacctagatgatagt
ggcattaacgatggcacacgtggcctggaagatgaactggaggatggtcttgacgaggaa
gaagacgacgaggattgtctcaaaggagagaggcagcagggtgatggagaggagagcgtt
gatccctctgatctccaagataaagttctggactttgatgaagacaagcgcaaccctcag
tacatccccaagaaaggtgcattttaccaacatgatgaccgcatggtaggagatgaagat
tcatctgaagtaccagaagaaaaaaatgaagatgacaagggggctcgccgacagaagaag
ctttggcatgatgaaggtgtttggggccatgacatgtaccgtgaggaggagcagggtccc
aaaacaagtgcggagcttgtgagcatatatggctacgatattcgtacagaactgatgcct
cctagagctcggagacggcgacgttatggccgtggccccaacaagtaccagcgcaactgg
gaagatgaagaggcttacaccccccggtcagggtcaggacgtggtggaggagcacgtggt
ggtcgcaggaccagaggtggaagccacattgggaaccccccattccatgatgaggacttc
cccgacctgcactcgaagccttcgaactctgaaaatactgcctccgtgcagcaggacagg
gcagaagtgaagccgtcagccaggcctgcagtgttcaaaggttccgactcgacagaaagc
agcagttctcaacaggaggaatgggaccacacagtcaaaggctccggaatgacccaccgg
ggttggggcaagcgtccttctcaacctcctaggagagtaccagatgcactgccaaggcag
caggactgcgaagtcaaggagaatgcaactttagggcatcgtgtcaacaggcctgcacca
cggtcgccagtgaaggctgttgaagcacctcaaatttcactctctactggcagaagtcga
gctatgcggcatctgctgaccgagcatgaacgaagcaaaagggattacgaggcactcgag
aaatttgctgctaaaggagagcttcaggacggtgataaagcggatttgaagaggagtaca
gcagctgcagtgacacaaaggggaggtccagtaggtagcacagaatctgcagccaaacca
aggcgctactcttcattacgacaacggccccttgcagaggctgccccctacaccgagact
gctgtggttgctccccagctgcctaacacacaggccccattgcctacaccgaatcagcca
cagccagctattttgactgcagcacatttccaagcaccgtatacaccgtatcctgatggc
tacatgcttccaccaccgggccagccacctgctgtgatgcctacaccgaatcagccacct
cctgttatggcagcgccttccccactgaccagctcgttcttacccccaccaacgggcatc
gtcagctttcctccccagtaccctccaccttacacctttccagcacagtatgctgcacct
gccccagcagctgcacccccaacgcagacgcaagcccagaagccaccatactaccatggg
gacataatctactacaacacgcaaagccagcagcataagcaacggcccacccctcctcga
aggcctaaagcagctatccctatcgtgcctcctccagattcccaaggcacagtgcaggct
gctgctgagagagattctttccatgaatcagtggtatttagaccggaagaagggaaggaa
gcatcagcatcacaacccagtgctgtgaaaatgctgcagagggtcactgctgaacattac
aataaggaagcaagcttagcgtctgaccacctcgagctcgtcatgagagatggcaactgg
ccgaacatcaagcaagcccactttgataacgatgtgtctgctgcggaatatctgcgcgca
tcattcttcgcatcgcgctttcagaaacctacaccttgttctcaagagaatatgctcaaa
gcagaacctcttcgtgcatcagtgtatgattgtgagaaagcaaatgtgaacacaaatggc
tggactcaaagcaagtgtccagcttgtcatcaacccttaccatatatgccatggtgtagt
taa
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