Rhipicephalus sanguineus (brown dog tick): 119379216
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Entry
119379216 CDS
T07382
Name
(RefSeq) collagen alpha-1(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119379216
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rsan00536
]
119379216
Glycosaminoglycan binding proteins [BR:
rsan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119379216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
119379216
NCBI-ProteinID:
XP_037504378
LinkDB
All DBs
Position
1:131217839..131303539
Genome browser
AA seq
1523 aa
AA seq
DB search
MGLSVKGDAVTLIKDCVVRETEEMARSDDVLVDTSGVTLVGQALNITVDPFQGDLQQLLI
VPAPDAAYELCSSYVPGCAIPLPPLDADYGDPLLNRTDPGEREPQPGGTYHNETTPYYPD
GGTTPVPPYYPGISYPVEGPPGPQGFPGPPGFPGLKGDKGDPGRDGLAGTAGQPGAPGHV
FMIPYPRAEDIKGPDNTEPLRQMLSQHMMAMRGAPGPMGLTGLHGPVGPTGPPGEKGERG
EQGDVGPRGMRGQQGTSGKPGRRGRSGKDGERGKPGPLGPKGDIGLPGLPGLPGEKGERG
FIGAPGDQGLVGHEGAPGDDGATGLPGLPGEMGPRGFPGPRGFVGLPGPPGIPGAEGPVG
PKGNTGPPGGPGQPGQQGMQGPGGSPGPQGLLGPLGPQGPRGKPGLPGLPGADGMPGPPG
NAGPPGGKGDMGQAGQQGPTGFPGPRGVKGDDGPRGPQGDKGDKGAPGVDGQKGDHGLTG
DRGAPGTEGVQGIEGPEGPKGFEGPRGEKGPPGPPGEKGKLGIPGFPGYPGSTGPKGEKG
FHGKPGEKGDKGDRGPTGLHGERGQMGPRGNRGQRGRVGKRGAPGEKGSTGEPGPPGIQG
ERGPQGPEGARGFMGVPGSPGAAGKDGPPGTPGERGPPGETGTAGPPGPPGVIGPAGPPG
ETGASGDIGPPGRPGLPGETGLPGPAGKEGPTGPVGLPGNKGPPGPPGPQGFPGERGNMG
PPGFPGPKGEIGLPGALGPRGEKGDIGLPGDPGPAGEKGRSGPVGPPGPLGPKGDKGDLG
GPGPLGRDGLPGARGLPGPPGPVGAPGEDGDKGDSGLPGQKGLKGTKGDTGPPGVAGPQG
LRGEPGVPGAEGEQGPRGPTGPQGSKGEDGPIGATGSAGAPGPQGLPGPRGGKGDKGDVG
KKGPPGPAGMRGEPGPIGAKGGEGIPGSPGPEGPQGQKGDDGAPGLPGAPGKDGEQGPRG
PPGPKGEEGKPGLQGVPGVKGPPGLEGPKGSPGPPGFPGPPGAAGLPGIKGERGIDGVDG
QPGAAGEMGPKGEMGKMGTPGAPGKPGPMGPPGLQGDVGLPGDKGDKGQMGPPGLQGPTG
PPGPPGPPGPQGLRGSPGVAGDVGAPGLVGPPGQPGSTGAPGDKGMKGDRGKRGFKGHSG
LLGRTGAKGDIGEKGEKGQRGDTGPPGPPGPQGPIGMEGAKGSDGPQGEPGPEGIPGPKG
VQGPAGIKGETGPPGPVGPPGPPGEGPQIPPEMLFQRDRHNRFKRSLEKLNSSDEDDFTV
ATGKSDDDDDVDEHNSTMTAEPLTEASFEKINRTLTHIFANVYIMRREIEHIRRPVGSQP
NPARSCRDLRLAHPDTPDGWYWVDPNLGASDDAVRAYCGMRAGGETCVFADEEAHAARIF
RWEKPPTSAAGNGSSTWFSHLKGGFRVRYRTVGDVQLRFLGLLSTGAYQNFTFVCNNVNA
WYSQRTKDHAHALRFRGRDAAVISFEKNSPTVPVDDCQYRDGKTVFVFKTKEPATLPIVD
FQPFDFGGEHQSFGFEIGPVCFQ
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atggggctgagcgtgaaaggggatgcagtcaccctgatcaaagactgcgtggtgcgagag
actgaggagatggcccgctccgacgacgtgctcgtcgacacctcgggcgtcactctagtc
ggacaggcgttgaacatcactgtcgaccccttccagggagacctgcagcaactgctgata
gtccccgctccagacgcggcttacgagttgtgcagtagctacgttcctggatgcgccatc
ccgctgccgccgctagatgccgactacggagacccactcctcaacaggactgatcctggt
gagagggaaccgcaaccgggtggaacctaccacaacgaaacgactccgtattatccggat
ggaggaacaacaccggtcccaccctattatccggggatcagctatcccgttgaggggccg
ccgggtcctcagggctttcccggtcctcctggatttcctggactaaaaggcgacaaggga
gacccgggaagggacggacttgccggcacggcggggcagcctggcgcccctggacacgtc
tttatgattccatatccgagagcagaagacatcaaaggtcctgacaacaccgaaccactg
cgacagatgctcagccagcacatgatggcgatgcggggcgcccctgggcctatggggttg
actggcctacatgggcctgtgggtcccacaggaccgccgggtgagaaaggagagcgcgga
gagcaaggcgatgtggggccaagaggaatgcggggccagcaaggaacatctggaaaaccg
ggaagacggggacgaagcggcaaggatggggaacgtggaaagccaggacccctgggtccg
aagggcgatataggccttccgggtcttccaggtctgccgggagagaaaggtgaaaggggt
ttcatcggcgctccgggcgaccagggcctggtcgggcacgaaggggccccgggtgatgat
ggagctacaggactgcccggacttcccggagaaatgggtccgcgaggattcccaggcccc
cgcggattcgttggactcccaggaccacctggaataccgggcgccgaagggcctgtggga
cctaagggtaacacgggtcctccaggtggacctgggcagccaggacagcaagggatgcag
ggtcctgggggatcgccaggccctcagggcctcctaggaccactgggaccacagggtcct
cgaggaaaaccaggacttccaggtcttccaggagcggatggaatgccaggaccgccagga
aatgctggcccacccggcggtaaaggtgatatgggacaagctggacagcagggaccaaca
ggattcccaggtccccgtggcgtcaagggtgacgacggtccgcgaggtccgcaaggtgac
aaaggtgataagggtgctcccggagtggacggccaaaaaggtgaccacggacttactggc
gaccgaggtgctccaggtaccgagggtgtccaaggaatagaaggccctgaaggccccaag
ggatttgaagggccccgaggagagaaagggccgccaggaccaccaggcgaaaagggtaaa
ctgggcattccgggattcccaggatatccgggatcgactggacccaagggcgaaaaagga
tttcacgggaagcccggagagaagggagacaaaggtgaccggggaccaacaggcctacac
ggagagcgaggacaaatgggaccacggggaaacaggggccaaagaggaagagtcggaaaa
agaggtgcacccggagaaaagggcagcaccggtgagcccggacctcctggcattcagggc
gagagggggccccaaggccctgaaggcgccagaggcttcatgggtgtgccagggtcgcct
ggagcggcgggaaaggacgggcctccgggaactccaggagagcgagggccacccggtgaa
accggcacagcgggacctccagggccacctggcgtcatcggaccggcgggcccacccggt
gaaacaggagcctccggcgacatcggaccgcctggtcgtccgggtcttcccggtgagacc
ggcctgcctggacctgctggaaaagagggcccgacgggtcccgtcggccttccgggcaac
aaaggtcctcctgggcctccaggccctcagggttttccaggagaaaggggaaacatggga
ccgccggggttccctggtcccaaaggtgaaattgggcttccaggagcactcgggccgcgc
ggtgaaaaaggagacatcggcctacctggcgaccctggacctgccggtgaaaagggacgc
agcggtccggtcggtccaccagggccattgggtccgaagggagacaagggtgacctggga
ggtcctggtcccctcggcagagacggacttccgggagcgagggggctgccgggaccgccg
ggacccgttggagcaccaggagaggacggagacaagggtgactctggcctccctggtcaa
aaagggctgaaaggtaccaagggtgatacggggccccctggtgtggctgggccacaagga
ctgaggggagagcctggcgtaccaggcgcagaaggcgagcaaggtcctcgaggtcccact
ggacctcaaggaagcaaaggagaggatggtcctatcggagccaccggcagtgccggggcc
cctggacctcagggtcttcccggtcctcgcggtggaaaaggtgacaagggagacgtaggc
aagaagggtcctcctggaccggcgggaatgcgtggcgagccgggcccaataggagccaag
ggcggcgaaggaattcctggttccccaggacccgaaggtcctcagggccaaaagggtgat
gacggagcgcccggcctccctggcgcaccgggcaaagacggcgaacaaggaccgagaggt
cctccaggtcctaaaggtgaagaagggaagcctggtcttcagggtgtacctggtgtcaaa
ggacctcctggcctcgaagggcctaaaggttcacccggcccgccaggctttcctggccct
cctggtgcagctggattgcccggaataaagggcgaaagaggaattgacggagtcgacggc
caaccaggcgcggctggtgagatgggtccaaaaggcgaaatggggaaaatgggaacacct
ggagcacctggaaagccgggcccaatgggtcctcccggcttgcaaggtgacgtcggcctt
cctggagacaaaggtgacaagggccagatggggccaccaggactccagggccccacagga
ccaccgggtccacctggaccacccggaccacaaggtcttcgagggtccccgggcgttgca
ggtgacgttggagcacctggcttagtggggccgcctggccaacctggaagtacgggtgcg
ccaggcgacaagggcatgaagggtgatcgaggaaaacgtggcttcaagggtcacagtggg
ctgctaggaagaacaggtgccaagggcgacatcggtgaaaagggagaaaaaggtcagcgc
ggagacaccggacctccaggacctccgggaccccagggacccatcggcatggaaggcgct
aaaggctccgatgggccacagggagagccgggacccgaaggaattccggggcctaaaggc
gttcagggaccagcaggaataaagggagaaacaggaccaccaggacctgtaggacctccg
ggcccgccaggagaaggaccccagatacctccggagatgctgttccagagggatcgccac
aacaggttcaagcgcagccttgaaaaacttaacagcagcgatgaagacgatttcactgtt
gccaccggtaagagcgacgacgacgacgacgtcgacgagcacaactccacgatgacagct
gaaccactgaccgaagcatcattcgagaagatcaaccgtacgctgacgcacatctttgcc
aatgtgtacatcatgcggcgcgagattgaacacatccggcggcccgttggctcgcagccc
aatccggccaggtcatgccgcgacctgagactcgcgcacccggacacccccgacggctgg
tactgggtggaccccaatttgggcgcgtcggacgacgcagtgcgcgcctactgcggcatg
cgtgccggcggcgagacctgcgtgttcgccgacgaagaagcacacgctgcccgcattttc
aggtgggagaagcccccaacctccgcagctggcaatggctcgtcgacatggttcagccac
ctcaagggtggcttcagggtgcgctatcgcaccgttggcgatgttcaactgcgctttctg
ggacttctgagcaccggagcctaccagaactttacattcgtgtgtaacaacgtgaacgct
tggtacagccaacggactaaagaccacgcacacgcacttcgcttccgaggccgcgacgct
gctgttatcagcttcgagaagaacagcccgacggtgcccgtggacgactgccagtaccgg
gatggcaagacggtgttcgtgttcaagaccaaggagcccgccacactgccaattgtagac
ttccaaccattcgacttcggcggcgaacaccagtcctttggattcgagatcggacccgtc
tgttttcaataa
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