Rhipicephalus sanguineus (brown dog tick): 119379616
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Entry
119379616 CDS
T07382
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119379616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsan03041
]
119379616
03009 Ribosome biogenesis [BR:
rsan03009
]
119379616
Enzymes [BR:
rsan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119379616
Spliceosome [BR:
rsan03041
]
Complex A
U2 snRNP components
U2 related factors
119379616
Complex B
119379616
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
119379616
Ribosome biogenesis [BR:
rsan03009
]
Eukaryotic type
90S particles
Helicases
119379616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ABC_tran
AAA_30
Flavi_DEAD
PhoH
AAA_25
T2SSE
TsaE
DUF6682
Motif
Other DBs
NCBI-GeneID:
119379616
NCBI-ProteinID:
XP_037504852
EnsemblRapid:
LOC119379616
LinkDB
All DBs
Position
1:339822758..339888201
Genome browser
AA seq
690 aa
AA seq
DB search
MSKRHRIDVGDSPVTKKRDRDIDYDREDRNKEKIDNCHNSQSVPVSQQLNALTGLPYSNR
YYELFRKRIALPVWEYRDKFFEYLNKHQILVLVGETGSGKTTQIPQWCVELLRQKGGRRG
VACTQPRRVAAMSVAARVAEEMDVAIGQEVGYSIRFEDCSSPKTLLKYMTDGMLLREAMS
DPLLEAYGVVLLDEAHERTLATDILMGVLKQVVTQRPDLKIVVMSATLDAGKFQNYFDNA
PLMSVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEIEGDILLFLTGQEEIEEACK
RLKREIDNLGPDVGEMKCIPLYSSLPPNLQQRIFEPPPPAKANGAIGRKVVVSTNIAETS
LTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASSQQRAGRAGRTRPGKCFRLYTE
KAYKTEMQDQTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLQ
SLDDNGELTELGSIMAEFPLDPQLAKMLITSCEYNCSNEALSITAMLSVPQCFVRPNEAK
KAADESKMRFAHIDGDHLTLLNVYHAFKQNHEDTQWCYDNFINYRSMKSADNVRQQLSRI
MDRFNLRRTSTEFTSKDYYINIRKTLVSGFFMQVAHLERTGHYLTIKDNQVVQLHPSTCL
DHKPEWVVYNEFVLTTKNYIRTVTDIKPEW
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacacagaatagatgtgggagattccccggtaaccaagaaaagagatcgg
gacatcgattatgatcgggaggaccggaacaaagagaaaatagacaactgccataattca
cagtcagtgccagtgtcgcagcagctgaatgccctgactggtcttccctactccaaccgt
tactatgagctattccgcaagcgcatagcgcttccagtatgggagtatcgagacaagttc
ttcgaatacctcaacaaacatcagattcttgtattggttggagaaacaggatctggcaaa
acaacacagattccacagtggtgtgtggagcttctgcgccagaaaggaggtcgccgtggt
gtagcatgcacacagcccaggagagtagcagccatgagtgttgctgcacgagtggcagag
gaaatggatgtggctatcggccaggaagttggttatagtattcgttttgaggactgctct
tctccaaagacattgctgaagtacatgactgatggtatgctgctacgagaagccatgagt
gacccactgctagaagcatatggtgttgtgctcttggatgaagcccacgaacgcacttta
gctacagacatcctcatgggagtcctaaaacaggttgtcacccagcgaccagacctgaag
attgttgttatgagtgccactcttgatgctggtaaatttcagaattatttcgacaatgct
ccactgatgagcgttcctggtcggacacatcctgttgagatattctacacaccagaacct
gaacgagactaccttgaagcagccattaggacggtcatccagattcatatgtgtgaagaa
attgaaggcgacattctgttgtttctgacaggtcaagaggaaatcgaagaggcatgtaaa
aggctgaagcgggaaattgacaacttgggaccagacgttggggaaatgaagtgcattccg
ctctattcatcattgccaccaaatctgcagcagcgtatctttgagccgccgccacctgcc
aaggctaatggggccattggccgaaaagtggttgtctcaacaaatattgctgaaacatct
ttgaccatcgatggtgtggtcttcgtgattgaccctggttttgccaagcaaaaggtgtac
aatcctcgcatccgtgttgagtctctcttggtatcacccatcagcaaggccagctctcag
caacgagcaggccgggccggccgtacaaggccaggcaaatgctttagactttacacagaa
aaggcatacaagacagagatgcaggaccaaacgtatcctgagattcttcggtcaaacctt
ggttcagttgttctccaactgaagaagttgggcattgatgacttggtgcacttcgatttc
atggatcctccagctcctgaaacgttgatgcgtgcattagagctcctgaactacctgcag
tccctggatgacaatggtgaactcaccgaattgggatctataatggcagagttccccctg
gaccctcagctagccaagatgctgatcacttcgtgcgaatacaattgctccaatgaagcc
ctttccatcacagctatgctatcagttccgcagtgctttgtccgccccaacgaggccaaa
aaggctgctgacgagtccaagatgcgcttcgcccacattgacggagaccacctgaccctg
ctgaatgtgtaccatgccttcaagcagaaccacgaggacacccagtggtgttacgacaac
ttcatcaactaccgttctatgaagagtgcggacaacgtgcggcagcagctgtcaagaatt
atggaccgcttcaaccttcgccgaacatctacggagtttactagcaaagactactacatc
aatattcgcaagacccttgtgtctggcttctttatgcaggtggcccacttggaaaggact
ggtcactatttgacaatcaaagacaaccaggttgtgcagctccatccatcaacttgcttg
gatcacaaacctgagtgggtggtgtataatgagtttgtcctcaccaccaagaattacatt
cgtacagtcacagacatcaaacctgaatggtga
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