Rhipicephalus sanguineus (brown dog tick): 119382847
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Entry
119382847 CDS
T07382
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03013
Nucleocytoplasmic transport
rsan03015
mRNA surveillance pathway
rsan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119382847
09122 Translation
03013 Nucleocytoplasmic transport
119382847
03015 mRNA surveillance pathway
119382847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsan03019
]
119382847
03041 Spliceosome [BR:
rsan03041
]
119382847
Enzymes [BR:
rsan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119382847
Messenger RNA biogenesis [BR:
rsan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119382847
Spliceosome [BR:
rsan03041
]
Complex C
Other components
EJC/TREX
119382847
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119382847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
119382847
NCBI-ProteinID:
XP_037506654
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All DBs
Position
2:complement(44684786..44686075)
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AA seq
419 aa
AA seq
DB search
MADNDLLDYEEEQEQSAEESLPQVKKPIGGYVSIHSSGFRDFLLRPELLRAIVDCGFEHP
SEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPVENQVSVLVMCHTRELAFQ
ISKEYERFSKYLPSVRVGVFFGGMNITNDEKALAGSCPHIVVGTPGRVLALVRSRKLQLR
HVKHFVLDECDKVLEQLDMRRDVQEIFRATPHEKQVMMFSATLSKDIRPICLKFMQDPME
VYVDDEAKLTLHGLQQYYVKLRENEKNRKLIELLDFLEFNQVVIFVKTVQRCVALAQLLV
EQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDS
DTYLHRVARAGRFGTKGLALTFVADEQDARTLNEVQDRFDVNVSELPEEIDISSYIEGR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaacgatttgttggactacgaggaagagcaggagcagagtgcggaggaaagc
ttaccccaagtaaagaaacccattggaggctacgtgtccattcacagctcgggcttcagg
gattttcttctgaggcccgagcttctacgcgccatcgtggactgcggcttcgaacacccg
tccgaagtacaacacgagtgcataccacaggcaatcctgggcatggacatcctgtgtcag
gccaagtctggcatgggaaagaccgccgtgttcgtcctggctaccctgcagcagctggac
cccgtcgaaaaccaggtgtccgtgctcgtgatgtgccacacccgagagctggccttccag
atatccaaggagtacgagcgtttctccaagtatctgccttcagtgcgtgtgggcgtgttc
tttggcggcatgaacatcaccaacgacgagaaggcgctcgcgggcagctgtccccatatc
gtggtgggcacacccggtagagtcctggccctcgttcgcagccgtaaactgcagctgagg
cacgtcaaacacttcgttctggacgagtgcgacaaggtgctcgagcaactggacatgcgt
cgggacgtccaggagatatttcgcgccactcctcacgagaagcaggtcatgatgttcagc
gctacgctgagcaaggacatcaggcccatttgcctcaagtttatgcaagacccgatggag
gtgtacgtggacgacgaggccaagctgacgctgcacggtctgcagcagtactacgtgaag
ctgagggaaaacgagaagaaccgcaagctgattgagctgctcgatttcctcgagttcaac
caggtggtcatctttgtcaaaacagtccagcgctgcgtggctcttgcgcagctgttggtg
gaacagaacttccccgccatcgcaatccaccgtgccatgactcaggaggaaaggctgtcc
cgctaccagcagttcaaagactttcagaagcggatcctcgtggccacaaacttgttcggg
cggggtatggatattgagagagttaacatcgtcttcaactacgatatgcctgaagactca
gacacatacctccacagggttgctagagctggacgttttggcaccaaggggttggcgctg
acatttgtagctgatgagcaggacgcaagaaccttaaatgaagtacaggaccggttcgac
gtgaacgtctccgagctgcccgaggaaatcgacatttcctcttatatcgaaggtcgctga
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