KEGG   Rhipicephalus sanguineus (brown dog tick): 119390989
Entry
119390989         CDS       T07382                                 
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA 3' end processing protein WDR33-like
  KO
K15542  polyadenylation factor subunit 2
Organism
rsan  Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rsan00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    119390989
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsan03019]
    119390989
Messenger RNA biogenesis [BR:rsan03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     119390989
SSDB
Motif
Pfam: WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML WDR55 Beta-prop_IFT140_1st WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th eIF2A WD40_RFWD3 Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_WDR11_2nd PEP5_VPS11_N Beta-prop_SPT8 Beta-prop_RIG_1st PROPPIN
Other DBs
NCBI-GeneID: 119390989
NCBI-ProteinID: XP_049270965
LinkDB
Position
4:192984389..193262279
AA seq 808 aa
MQVIQTQPMTPAGRFQYGGGPKYGGGYGGPRNPGGPYGPVGGRPGMTSMQSIEFDGKRLR
KAVARKTVDYNAAVVEYLENRVWQRDYRDARALQPDSGYYTRLMPPLAMLANPINAVTTK
FVRTSTNKMRCPIFCVVWTPEGRRLITGASSGEFTLWNGLTFNFETILQAHDSSVRCMVW
SHNDTWMVTGDHSGYVKYWQSNMNNVKMFQGHKEAIRGISFCPTDTKFTTCSDDGTVRVW
DFLRCFEEKILRGHGADVKCVDWHPQKSLIVSGSKDSQQPIKLWDPKSGQSLATIHAHKS
TVMEVKWNRNGNWLLTASRDHLLKLFDIRKMNQEMQTFRGHKKEACSLAWHPIHECLFAS
GGSDGAVMFWMVGADKEVGAMENAHDSCVWSLAWHPLGHILCSGSNDHTSKFWTRNRPGD
KMRDKYNLNTLPRGLDDSGEYDEPTTTPASATPNIPGMGLEQATLEAVRALSDVQTSAAP
ISGGGGRKDFGGGRELGGSIPGLDFGEEMHSESHSGGGGRHKRTPFSKPIPKHFQQQWME
NKQPLLLAPPPPEGGVPAQKQDGADGSQPPATMPGMTPQGGMNLQQQGMPMMGQPPGFAP
VGGLLNAPPHPTGMMFPPHFQGTPPVSAAGVDAPPNGVPPMGFRHQGMPSLAGQDQGQFQ
RPGSGEWRNMGDSGNQPPPQHRQQFQQQQQQQDGSAPDSGNFFQPQQPQQQQFWRGSPHK
RGGSTHWYQGDGGTPGQQQQQQQQQQQEGLKRPWGADEGGSEGQPPSKRGGGWGTRGGFG
RGFGRGGFRGRGGFRGGRGGPRGGARGH
NT seq 2427 nt   +upstreamnt  +downstreamnt
atgcaggtgattcagacgcagccgatgactcctgctggccgcttccagtacggaggtggc
cccaagtatggcgggggctacggagggccacgcaacccaggaggaccctacggccccgtc
ggaggtcgacccggcatgacctccatgcagagcatcgaatttgatggcaaacggctgcgc
aaggcagtggctcgcaagactgtcgactacaacgcagctgtggtcgagtacctagagaat
cgagtctggcagagggactaccgtgatgcaagggccctgcagccggattcaggctactac
actaggctgatgcccccgctggcaatgttggcaaaccccatcaatgctgtgaccaccaag
tttgtgcgcacctcgaccaacaagatgcgctgtcccatcttctgtgtagtgtggactccc
gagggtcgccgcctcatcacgggtgcatcaagtggggagttcaccctctggaacgggctc
acgttcaactttgagaccattctgcaggcgcacgactcgtcggtgcgctgcatggtgtgg
agccacaacgacacgtggatggtgacaggcgaccattcgggctatgtcaagtactggcag
tccaacatgaacaacgtcaagatgttccagggccacaaggaggccattcgaggcatcagc
ttctgcccgacggacacaaaattcaccacttgttccgatgacggaacggtgcgtgtctgg
gacttcctgcgctgctttgaggagaagatcctccgagggcatggggcggatgtcaagtgc
gttgattggcacccacagaagtcactcattgtttctggcagcaaggacagccagcagccc
atcaagctgtgggaccccaagtctggccaaagcctagcaaccatccatgcacacaagagc
acagtgatggaggtcaagtggaaccgcaatggcaactggctgctcaccgcttcccgagac
cacctgctcaaactctttgatatccgcaagatgaaccaggaaatgcagaccttccgtgga
cacaagaaggaggcctgcagcttggcatggcacccaatccacgagtgcctgtttgccagt
ggtggttctgatggcgccgtcatgttctggatggttggggctgacaaggaggtgggcgcc
atggagaacgcccatgactcgtgcgtctggtccctggcctggcacccattggggcacatc
ctctgctcgggctccaacgaccacaccagcaagttctggacgcgcaatcgacctggtgac
aaaatgcgggacaagtacaatctcaacactctgcccagaggactggatgactctggagag
tatgatgagccaacgaccacaccagcatcagccactcctaatatacctggcatgggactg
gagcaggccaccctggaggcagtgcgtgctttaagtgatgtgcagacttcagcagcaccc
atttcggggggaggcggtcggaaagactttggtggtggccgggaactcggtggctccatt
ccgggcctggactttggcgaagagatgcactcggagagccactcgggcggtggcggccga
cacaagcgcaccccgttctccaaacccattccaaagcacttccagcagcagtggatggag
aacaagcagcccctgctgctcgcacctccaccacccgaaggaggcgtgcctgctcagaag
caagacggtgcagatggttcccagccgccagcgacgatgccgggcatgacacctcaaggt
ggtatgaaccttcagcagcaaggcatgccgatgatgggccagccacctggctttgcacct
gttgggggcctgctgaatgcacccccgcatccaacaggcatgatgttccccccacacttc
cagggcaccccaccagtctctgctgccggtgtcgatgcaccgcccaacggagtgccaccc
atgggctttcgacaccagggtatgccatccttggctggtcaggaccagggccaattccaa
aggcccggaagcggcgagtggcgcaacatgggtgactctggcaaccagccaccaccacag
cacaggcaacagttccagcagcagcaacagcagcaagatggcagtgctcctgattctggc
aacttcttccagccacagcagccgcaacaacagcagttctggcgaggcagcccacacaag
cgtggaggcagcacccactggtaccaaggggatgggggaacccccgggcagcagcagcag
cagcagcagcagcagcagcaagagggactcaagcggccgtggggcgccgacgaaggggga
tcagaggggcagccacctagcaagaggggcggaggatggggcaccaggggcggttttggg
cgcggctttggccgagggggctttcgtggccgagggggcttccgcggtggcaggggcggt
ccgaggggaggggcaaggggccactga

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