KEGG   Rhipicephalus sanguineus (brown dog tick): 119394096
Entry
119394096         CDS       T07382                                 
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
rsan  Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03013  Nucleocytoplasmic transport
rsan03015  mRNA surveillance pathway
rsan03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsan00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119394096
  09122 Translation
   03013 Nucleocytoplasmic transport
    119394096
   03015 mRNA surveillance pathway
    119394096
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsan03019]
    119394096
   03041 Spliceosome [BR:rsan03041]
    119394096
Enzymes [BR:rsan01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     119394096
Messenger RNA biogenesis [BR:rsan03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     119394096
Spliceosome [BR:rsan03041]
 Complex C
  Other components
   EJC/TREX
    119394096
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    119394096
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 119394096
NCBI-ProteinID: XP_037517273
LinkDB
Position
1:complement(92571730..92597740)
AA seq 421 aa
MADNDLLDYEDEEDQEQTVGEAIPEVKKPTGGYVSIHSSGFRDFLLKPELLRAIVDCGFE
HPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPVEGQVSVLVMCHTRELA
FQISKEYERFSKYLPSVRVGVFFGGMNITNDEKVLKSSCPHVVVGTPGRVLALVRSRKLQ
LKHIKHFVLDECDKMLEQLDMRRDVQEIFRTTPHEKQVMMFSATLSKDIRPVCLKFMQDP
MEVYVDDEAKLTLHGLQQYYVKLKDNEKNRKLFELLDLLEFNQVVIFVKTVQRCMALAQL
LVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPE
DSDTYLHRVARAGRFGTKGLAVTFVSDEQDAKTLNEVQDRFDVNISELPDEIDISSYIEG
R
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgacaacgacttgttggactacgaggacgaagaagaccaagagcagaccgtgggg
gaagccatccccgaagtaaagaaacctactggaggctatgtgtccattcacagctcgggg
ttcagggatttccttctcaagcccgaactcttgcgcgccatcgtagactgcggcttcgaa
catccatccgaagtgcaacatgagtgcataccccaggcaatcctcggcatggacatcctg
tgtcaggccaagtctggcatgggaaaaaccgccgtgttcgtcctggctaccctacaacag
cttgaccctgtcgaaggccaggtgtctgtgctggtgatgtgccatacccgagagctggcc
ttccagatctccaaggagtatgagcgtttctccaagtacctgccgtcagtgcgtgtgggc
gtgttctttggcggcatgaacattaccaacgatgagaaggtgctcaagagcagctgcccc
cacgtcgtggtgggcacacctggcagagtcctggcccttgttcgttcccgtaaactgcag
ctgaagcacatcaagcactttgttctggacgagtgtgacaagatgctcgagcaactcgac
atgcgtcgggacgtccaggagatctttcgcaccactcctcacgagaagcaggtcatgatg
ttcagcgcaacgctgagcaaggatatcaggcctgtgtgcctcaagtttatgcaagaccct
atggaggtgtacgtggatgatgaggccaagctgaccctacacggtctgcagcagtactac
gtgaaactgaaggacaacgaaaagaaccgcaagctgtttgagctcctcgatctccttgag
ttcaaccaggtggtcatctttgtcaaaaccgtacagcgttgcatggctctcgcccaactg
ttggtagagcaaaactttcctgccattgccatccaccgggccatgacccaggaggaaaga
ttatctcgctaccagcagttcaaagacttccagaagcggattcttgtggccacaaacttg
tttggacggggaatggacattgagagagtcaacatagttttcaactatgatatgcctgaa
gattctgacacctacctccacagagttgctcgagctggacgctttggcaccaaggggttg
gcagtgacatttgtctccgatgagcaggatgcaaaaaccttgaatgaagtgcaagacagg
tttgacgtcaacatctccgagctgcctgatgaaatcgacatttcctcttacattgaaggc
cgctga

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