Rhipicephalus sanguineus (brown dog tick): 119399312
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Entry
119399312 CDS
T07382
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119399312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsan03041
]
119399312
Spliceosome [BR:
rsan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
119399312
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
PRP4
ANAPC4_WD40
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_EML
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_WDR75_2nd
Ge1_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
119399312
NCBI-ProteinID:
XP_037522059
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Position
1:complement(143138086..143199985)
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AA seq
562 aa
AA seq
DB search
MCSSAYPAVVFYYLVASLECRVSRCPTFIWGVLLVIGELEEAMSDDEDIAYVKRQKVVHY
GSLEERERQRLADREAEDGSDDDSQSTDLKAAMASGNVHISEEYMEIEDEGGRDKQQLLE
EFERRKKARQINVSTDDTEVKSTLRDMGEPICLFGEGPADRRERLRHLLALVGQDAIRRK
KEEERERERELRKDTYETTWYHESNEKLRECRLWIARFSLPRARHRIATAKEKLKSQGPA
ASDSQLHAKRQELYKTLRSLNINCSQIGDTRPISFCEFSPNSQMLATSSWSGLCKLWSIP
ECNLIRTLRGHNCNVGAITFHPRSTYLQSENALNMASCSADGVVNLWNLKSEEPMSTLRG
LCPHRVSRVAFHPSGRFLASCVFDHSWRLIDLETETEVLHQEGHSKAVYDISFQCDGSLA
ATGGMDAFGRVWDLRTGRCIMFLDGHLKSVLSLCFSPNGYVLATGSEDNTIKLWDLRQRK
CEYTIPAHHNLVSRVIFEKLSGEYLVTTSYDNTVKIWSNPEWTPIHSLSGHDGKIMGADI
SPNGKYLATSSFDRTFKLWTPE
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagtagtgcttatcctgcagttgttttctattacttggttgcatcgttagagtgc
cgtgtgtctaggtgtcctaccttcatatggggtgttttgcttgtcattggtgagcttgaa
gaggcgatgtctgacgatgaagatattgcatatgttaagcgccagaaggttgttcactat
ggaagtcttgaagagagagagcgtcaaagactggcagatagagaagccgaagatggtagt
gacgatgattcgcaaagcacggatctcaaagcagcgatggcttccggaaacgttcacata
tccgaggagtacatggagattgaggatgaaggcggccgagacaaacagcagctgcttgag
gagtttgagagaagaaaaaaggctcgtcagatcaacgtatcaactgatgacacggaggtc
aaatcaactttgcgcgacatgggagagccaatttgcctatttggtgagggtcctgcagac
cggcgggaacgtttgcgtcacttattggccttggtgggacaagacgcaatacgacgcaag
aaggaggaagaacgtgaaagagagcgagagctgcggaaagacacatatgaaacaacttgg
tatcacgagagtaatgagaagctgcgggagtgccgcctttggatagcacgtttctcattg
cctcgtgctcggcaccgtatcgccacagccaaagaaaaactgaaatcccaaggacccgct
gcatcagattctcagctgcacgccaaacgacaggaactctacaagactctcagatctttg
aacatcaactgcagccaaattggtgatacacgcccaatctccttttgcgagtttagtccc
aactcgcagatgctagcaacttcatcctggagcgggctgtgcaagctatggtcaatcccc
gagtgcaacctcatcaggaccttaagaggacacaactgcaatgtgggtgccattacattc
catccacggtcaacttacctgcagtcggagaacgcactcaacatggcctcttgctctgct
gatggtgtcgttaacttgtggaacctgaagagtgaagagccaatgagcacattgagaggg
ctgtgcccgcacagggtctccagagtggcattccacccttctggacgcttcttggcatcc
tgtgtatttgatcattcttggcgtctaatagacttggagactgaaacagaggtgctgcac
caagaagggcacagcaaagctgtgtatgacattagcttccaatgtgatggttcattggct
gctacagggggcatggatgcatttgggcgtgtctgggacctccgtactgggcgctgcatc
atgtttctagatggtcatctgaaatctgtgttaagcctctgcttctcgcccaatggctat
gttctggccactggcagtgaagacaacacaatcaagctgtgggacttgaggcaacgaaag
tgtgaatacaccattcctgctcatcacaaccttgtgtcaagggtaatttttgaaaaattg
tctggggaataccttgttacgacatcgtatgacaacacggttaagatctggtccaatccc
gagtggactccaatacatagcctcagtggtcatgacggcaaaattatgggtgccgacatt
tcacctaatggaaagtacttggcgacatcatcctttgaccggacatttaagctttggact
ccagaataa
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