Rhipicephalus sanguineus (brown dog tick): 119401254
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Entry
119401254 CDS
T07382
Name
(RefSeq) protein PAT1 homolog 1 isoform X2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119401254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsan03019
]
119401254
Messenger RNA biogenesis [BR:
rsan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119401254
mRNA degradation factors
5'-3' decay
Decapping complex
119401254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
119401254
NCBI-ProteinID:
XP_037523866
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All DBs
Position
8:complement(5372631..5613745)
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AA seq
805 aa
AA seq
DB search
MSKGFVAFRKESQGGLHPLSVEDELLTAEVEDDYDALNDETFGGGLDEGWEEAHEKFAEL
EDRARQDSSMVDSLVDEDPLLLNQEVVEQSISHLGLEDDRDDDPAIKSYSKSTTSPWPIE
RGRPCSSPPPPPATLQHFGGSPKTDTIWTPKAVHPPSTENRLASLLWKLQQQSSSTQVLS
QPVPRRSSLPPNVHTLEELERDMLHSGGSHPVPIGGSRGGGSPWVAGHTEHGVAGYPCGS
TPPGHRGSAEHSTGGVLPAAFSAQQYRFSPGRPPYPPPPSGVPTLPSQLGVSPPARAPGL
VHGCMSPGNYSPGFGSRLPMPPVPHPLLGRGRGVMMGPSMLLNNTLPNHMPLQGTLPFRP
GLNQFASSSGSGHYQQHAYQTVFGQGGLPHDSFRQASHHSYLRPHGSLDNRDNSLFGDHS
DDPYAGLMTQKEKDWLVKIQLLQVQPENPDVDDYYYVMFTKRKAERQELPGVDGGDGDKP
KFIRPERVRTESKSYTPIQFERSLGKLQVVSVNYPRKILDMGVQRLSEDEDRKVPPDRHL
LWFRQLLLDIEKLYSAVLEYEDSSCSAERRLEIAEKLFAEVQPSEERFIQVVGVRKGRSL
VLRVLPKLKAEHQVATLAALLRHLSWLQRKDRHDGTLERGLLSAVAVIEHASLNDLIQLA
ASLLMNPDAAFPSRFALRVAWAIVVQAEQHFQREEGGQTFSSEVHKKWARLLSEMVDLLI
ASLKKHDNGKDDTSDHYSAAVHLLFPHERRALASQLQRFAINSQLASELNTAAKSSQQSE
LHQQNGFGDKGAFPYCGDEPVTAVH
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaggatttgtggctttccgcaaggagtcccagggggggctgcatccgctgagt
gtcgaggatgagcttcttacggctgaagttgaggacgactacgatgccctcaacgacgag
acctttggaggtggtctcgatgagggctgggaggaggcgcatgagaaatttgctgaactt
gaggatcgagccagacaggactcctccatggtggattcactggttgatgaagaccctctt
ctgttaaaccaggaggtggtagagcaaagcatctctcaccttggcttggaagatgaccga
gatgatgacccagccatcaagtcttactccaagtccacaacgtctccatggcccatcgaa
cggggccgcccctgttcttcaccaccaccaccgccggcgacgctgcaacattttggcggt
tcgcccaagacggacaccatctggacacccaaggcagtccatcccccttccactgaaaac
agacttgcttccctcctatggaaactacagcagcaaagctcctccacacaagttttgtcc
cagcctgttcctcggagatcgtcgttgccccccaatgtgcacacgttggaagagcttgaa
cgggacatgctgcattctggtggcagccatccagtgcccattgggggctcccgaggcggg
gggtcaccctgggttgctggccacactgaacacggggtggcaggatacccttgtgggagc
actcctcctggtcaccggggatcagcagagcacagcactggaggagtgctgcctgctgcc
ttcagtgcccagcaataccgtttcagtccaggccgaccaccctacccaccaccacctagt
ggtgtgccaacgttgcctagccagcttggtgtgtcaccccctgccagagcaccaggactt
gtccatggatgcatgtcaccaggaaattattcacctggcttcggaagccggctgccaatg
cctcctgtgccccaccccttgctagggcgtggcagaggggttatgatgggtccatccatg
ttacttaacaacacacttccaaaccacatgccactgcaaggcaccctgcccttcagacct
ggattgaaccagtttgcatcatcatctggcagtggacactaccagcaacatgcgtaccag
acagtatttggccagggtggcttgccgcacgacagcttccggcaggccagccatcactcg
tatttacggccacatggcagcttggataaccgcgacaactcattgtttggtgaccattca
gacgacccttatgccgggctcatgacacaaaaagaaaaggattggttggtcaagattcag
ctgctccaagtgcagccagagaacccagatgtggatgattattactatgtgatgttcacc
aaaaggaaggcggaacgacaagagcttcctggcgtggatggaggggacggcgacaaacca
aagtttattcgaccagaacgagtgcgcacagaatctaaaagctacacgccaatccagttt
gagcggtcgttgggaaagttgcaagtggtgagtgtcaactacccgcgcaagatcctcgac
atgggtgttcagcggctgtccgaagatgaagaccgcaaggtccctccagatcgccacttg
ttgtggttccgccaacttctgcttgacatagagaagctttactccgcagttctggagtat
gaggatagcagctgctctgcagagcgtcgtctagaaattgcagaaaagctttttgctgag
gtacagccctctgaagaacgcttcattcaggtggtgggtgtgcggaaaggccgctccttg
gtgcttcgtgtgctgcccaagctaaaagctgagcaccaggtggcaacattggcagctctg
ctgcgccacttatcatggttacagcgcaaggacaggcacgatggcacattagagcgaggg
ctgctcagtgccgtggcagtcattgagcacgcttctctgaatgacctcattcagctggcg
gccagcttgcttatgaatccagatgctgcatttcccagcagatttgctctccgtgtggcc
tgggctattgtagtacaagcagaacaacattttcagcgcgaggaaggtggccagacattc
agcagtgaagttcacaagaaatgggcaagactgctttctgaaatggtggatttactcatt
gcctctctcaagaagcatgacaatggcaaagatgacacaagcgaccactatagtgctgca
gtgcatctgctgtttccacacgagcgtcgtgcccttgcgtcacaattgcaacgatttgca
ataaactctcagcttgctagcgagctaaacactgctgcaaagtccagccagcagtcagag
cttcatcagcagaatggatttggtgacaaaggtgcgtttccctactgtggtgatgaaccc
gtaactgctgttcactaa
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