Rhipicephalus sanguineus (brown dog tick): 119404154
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Entry
119404154 CDS
T07382
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119404154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsan03019
]
119404154
03041 Spliceosome [BR:
rsan03041
]
119404154
Messenger RNA biogenesis [BR:
rsan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119404154
Spliceosome [BR:
rsan03041
]
Complex B
Other components
Prp19-related factors
119404154
Complex C
119404154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_2
Mad3_BUB1_I
TPR_12
ARM_TT21_C
RPN7
TPR_15
TPR_10
DHR-2_Lobe_A
ARM_TT21
PPR
TPR_16
Motif
Other DBs
NCBI-GeneID:
119404154
NCBI-ProteinID:
XP_037526676
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Position
1:189773895..189845056
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AA seq
845 aa
AA seq
DB search
MKSTKDIVFEEDDLPYEEEIIRNPFSVKHWIRYIDYKKDQPKHVINLICERALRELPGSY
KLWYNYLKLRRQQVRDLCITDPEYEDVNSAFERSLVFMHKMPRIWMDYCKFLTIQQRITR
TRRVFDRALRALPITQHHRIWPLYLEFVNMHDIPETALRVYRRYLKLCPENAEEFVEYLT
RIGRLDDAAVLLADIVNKEDFVSKEGKSKHQLWNELCEMISKNPDKVHSLKVDAIIRGGL
RRYTDQIGQLWNSLADYYIRAGLFERARDIYEEAIQTVLTVRDFTQVFDAYAQFEESVLC
AKMEETSKTKPSEESDLELELRLARFEDLMDRRPLLLNSVLLRQNPHNVHEWLKRVKLFE
GKPREIINTFTEAVQTIDPKLATGKLNVLWVSFAKFYEENDQIEDARIIFEKATQVPFTK
VEDLAHVWCEWAEMELRHENHEGALNLMQRATAMPSRKAAYHDQSEPVQFRVYKSLKVWS
LYADLEESFGTFKSAKAVYDRIIDLKIATPQIIINYGLFLEENNYFEEAFKAYEKGIALF
KWPNVFDIWNTYLTKFLKRYGGTKLERARDLFEQCLEGCPAKFAKALYLLYAKLEEEHGL
ARHAMAIYDRGCKAVLPEEQFEMFNIYILKAAEIYGLTHTREIYERAIELLPDIQARLMC
VRFADLERKLGEIDRARAIYAHCSQMCDPRTTADFWNTWKEFEVHHGNEDTMREMLRIKR
SVQAMYNTQVNFMTAQMLSATAREAAAAAGTEEAPKDSMQQLEAAAKLLADEARKDTARM
PGKDILFVRGGTTEDEQNLAEQSRTTNPDEISIDDEDGSDDDQQVEEVAVEQRSVPEEVF
GDLKK
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcaccaaggatatcgtatttgaggaagacgatctcccgtacgaggaagagatc
attcggaaccctttctccgtgaagcactggatacgctacattgactacaagaaagaccaa
ccaaagcatgttatcaacttgatctgcgaaagagctttacgagaacttcccggcagctac
aagctttggtacaactatttgaaattaagaagacagcaagtcagggatctctgcataact
gacccagagtatgaggatgtcaacagtgcattcgagcgatcgttggttttcatgcataag
atgccccgaatatggatggattactgcaaatttctcaccattcagcagaggattacacgc
actcgacgagtatttgacagggccctccgggctttgccgatcactcagcatcatcgcata
tggccactttatttggagtttgtcaacatgcacgacattcctgaaacagctcttcgtgtt
tatcgccgctacctcaagctctgccctgagaatgctgaagaattcgtcgaatacttgact
cgcattggccgcttggatgatgccgctgtactactggcagacattgtcaataaggaagac
tttgtctctaaggagggaaagtctaagcatcagctctggaatgagttgtgcgaaatgatt
tccaagaaccctgataaggtgcactcactcaaagtggacgccattattcgaggtggactt
cgccgttacacagaccagattggccagctttggaattccttggctgactattatatccgt
gctggattgtttgagagagcaagagacatttatgaagaagcaatacagactgtactgact
gttcgggactttactcaggtttttgatgcctatgcccagtttgaagaaagtgttctctgt
gctaaaatggaagaaactagcaaaacaaagcccagtgaagaaagtgaccttgaacttgaa
ctgcgtctggcacgctttgaggatcttatggatcgaagaccactcctgctgaacagtgtg
ttgctgcgacaaaatccacacaatgttcatgagtggctgaagagagttaagctttttgaa
ggaaagcctagagagataatcaacactttcacggaggctgtccaaaccatcgaccccaag
ctggccactgggaaactgaatgtcttatgggtgtcatttgccaagttttatgaagaaaat
gatcagattgaagatgctcgaatcatttttgaaaaagcaacccaagtgccttttacaaaa
gtggaagaccttgctcacgtgtggtgtgagtgggcagagatggaactgcgacatgaaaac
catgaaggggctctcaatctaatgcagagagccactgctatgccttccaggaaagctgcc
tatcatgatcaaagcgagccagttcaattccgtgtgtataaatcacttaaagtgtggtcc
ctgtatgcagacttggaggaaagttttgggacatttaagtctgcaaaggcggtgtatgac
cggatcattgatttgaagattgccacgcctcaaatcatcatcaattatggcctatttctg
gaagaaaacaactattttgaggaagcatttaaggcttatgaaaagggtattgcattgttt
aagtggcccaacgtctttgacatctggaacacatacttaaccaagttcctgaaacgttat
ggtggcactaaactagagcgggctcgtgatctttttgagcagtgccttgaaggttgccca
gcaaaatttgcaaaggctttgtatcttctgtatgccaagctggaggaagagcatggtctt
gcacgccatgctatggccatctatgatcgtggctgcaaagctgtgctgcctgaagaacag
tttgaaatgttcaatatatacatcttgaaagcagctgaaatatatggactgactcacacc
cgtgaaatctacgaacgtgccattgagcttcttccagacatccaagctcgactcatgtgt
gtgcgctttgcagaccttgagcgcaagttgggcgaaattgaccgtgctcgagccatatat
gcgcactgcagtcaaatgtgtgatccacgaacaacagctgacttctggaacacatggaag
gagttcgaggtgcaccatggaaatgaggacaccatgagagaaatgctacgaataaagcgc
agtgtacaggccatgtataacacccaggtcaacttcatgacagctcagatgctgagtgca
actgccagggaggcagcagctgcagcaggcactgaagaggctccaaaagactctatgcag
cagttggaagcagctgctaagttgttggctgatgaggcaaggaaagacactgcaagaatg
cctggaaaggacatactttttgtcaggggtgggactacagaagatgagcagaacctagca
gaacagagccgtactacaaacccagatgaaatcagcatagatgatgaagatggctccgat
gatgaccaacaagttgaagaggtagctgtggaacaaagatctgttccagaagaagtcttt
ggtgacctcaagaaatag
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