Rhipicephalus sanguineus (brown dog tick): 119404903
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Entry
119404903 CDS
T07382
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Pathway
rsan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119404903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsan03019
]
119404903
03041 Spliceosome [BR:
rsan03041
]
119404903
03009 Ribosome biogenesis [BR:
rsan03009
]
119404903
03016 Transfer RNA biogenesis [BR:
rsan03016
]
119404903
Enzymes [BR:
rsan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119404903
Messenger RNA biogenesis [BR:
rsan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119404903
Spliceosome [BR:
rsan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119404903
Complex C
U4/U6.U5 tri-SnRNP related factors
119404903
Ribosome biogenesis [BR:
rsan03009
]
Eukaryotic type
Pre-60S particles
Helicases
119404903
Transfer RNA biogenesis [BR:
rsan03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119404903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
119404903
NCBI-ProteinID:
XP_037527521
LinkDB
All DBs
Position
9:30917914..30958734
Genome browser
AA seq
1031 aa
AA seq
DB search
MDDLFSVFDDAPKSKFLTATTVKKEDVKDEESNRDDTGAGDFVQAIIDGKRSLDNDYEEE
PNKKRKTSDIWDDFDPAEYLPHVHVHSVESVEGCVHEVAMPEGMEYVPLKRNREGPAARE
YPFILDPFQQEAILCLEHNQSVLVSAHTSAGKTVVAEYAISLAFQEKQRVIYTTPIKALS
NQKFREFTDDFKDVGLMTGDVTINPSASCLIMTTEILRSMLYRGSEIMREVGWVIFDEIH
YMRDKERGVVWEETIILLPDNVRYVFLSATIPNAKQFAEWICHLHKQPCHVVYTEYRPVP
LQHYIFPAGGSGLYLVVDESGNFKEDKFNEAMALLQNAGDAAKGDSALKGRKGGFKGESN
CYKIVKMIMERDYAPVIVFSFSKKECEAYATQIARLDLTTFKEKKLVMEVFQNAMDSLSE
EDQKLPQVEQVLPLLKRGIAVHHSGLLPILKETIEILFAEGLVKALFATETFAMGLNMPA
RTVLFTNARKFDGKDFRWVTSGEYIQMSGRAGRRGLDDRGIVILMVDEKMSPAAGKDIVK
GLPDPINSAFHLTYNMVLNLMRVEEVNPEYILERSFFQFQNNASIPVYYQKLQKLQAELD
SFKIPNEPEVAAYYKVRQQLASLSRELQAFLTKPQYCVPYLQPGRMVHINNGNDDFGWGV
VVAYSKKKVVTARGQSGLKDPVVIVDVLLNVSKESAQTKLTSKLTPPKPGEKGEVQVVPL
TIDNITKMSSIRLFYNQDLKSSDNRAAVLKSIKEVEERFPKGIPLVDPFEDLNIKDANMK
EVVKKIEAFENRMYAHPMHSHPDLPKIYAEYEKKMKVAQEIREVKNELKKAKALLQMEEL
KCRKRVLRRLGYATASDVMEIKGKVACEVSSADELLVTEMIFNNMFNELNAHQATALLSC
LVFQEKSNEMPNLTEELSGPLRQMQDIARRIARVTKDAKLCIDEDTYVSSFKPHLMDVIY
AWSKGATFAHVCRMTDVFEGSIIRCMRRLEELLRQIIQAAKCIGNTELENKFSEAVKLIK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctattcagtgttttcgacgatgcgccgaaatcgaagtttttaaccgcaact
acagtgaaaaaagaggacgtaaaggacgaagaatcaaaccgtgatgatactggcgccggc
gactttgtgcaagccattattgatggcaagagatccctggacaacgattacgaagaggaa
cccaacaagaaaaggaagacttcggacatatgggacgactttgaccctgctgaatatctg
ccgcacgttcacgtgcatagtgtggagtccgtggaaggatgcgttcacgaggtggcgatg
ccggaggggatggagtacgtgcccctaaaacggaatcgagagggccccgctgcacgagag
tatccgtttatcctcgacccgtttcagcaggaggccatcctctgtctcgagcacaaccag
agcgtcctcgtgtctgcccacacctcggctggcaaaactgttgtggctgagtatgcaata
tcgctggcgtttcaagagaagcagcgtgtgatctacacaacacccatcaaagcgctcagc
aaccagaaattccgggagttcacggacgacttcaaggacgttggtttgatgactggtgat
gtgaccatcaacccaagtgccagctgccttataatgacgacagaaattttgagaagtatg
ctgtacagggggtccgaaatcatgcgggaggtcggctgggtcatctttgacgagattcac
tacatgagagacaaagaaagaggtgtcgtctgggaggagaccatcatcttgcttccggac
aacgttcgttacgtattcctctccgccaccatccctaacgcaaagcagtttgccgaatgg
atctgtcacctgcataaacagccatgtcacgtggtgtacacggaatatcgtccggtgccc
cttcaacactacattttcccggctggtggcagtgggctctaccttgtcgtagatgaatct
ggaaacttcaaggaggacaagttcaacgaagcaatggctttgcttcagaatgctggtgat
gctgccaaaggggactctgccctgaaagggcgcaagggtggattcaaaggcgagtcaaac
tgctacaagattgtgaagatgatcatggaacgcgactacgcgcccgttattgtcttcagt
ttcagcaagaaggaatgtgaggcatatgccactcagattgccagactggatttgaccact
ttcaaagaaaagaaacttgtgatggaagtcttccagaatgccatggactctctttcggag
gaagaccagaaacttcctcaggttgagcaggtgctcccgctcctgaagcgaggcattgct
gtgcatcattcaggcctgctgcccatcttgaaggagaccatcgagattctctttgcagag
gggcttgtcaaggcactgtttgcgacagagacatttgctatgggactcaacatgcctgcc
cgtacggtgctcttcacaaatgcgagaaagtttgacggcaaagacttcagatgggtcacc
tctggagagtacatccagatgagcggtcgtgccgggcggcgtggtctggatgaccgtggt
attgtcatcctcatggtcgatgagaaaatgagtccggcggctggcaaagacattgtcaag
ggcttgcccgacccaatcaacagtgctttccacctgacctataacatggtgctcaacttg
atgcgagtggaagaggtgaatcccgagtacatcttggagcggtccttcttccagttccag
aacaacgcatctataccggtctactaccagaagctgcagaagctgcaggcggagctggac
tcgttcaagatccctaacgagccagaggtggctgcctactacaaggtgcggcaacagttg
gcctccctgtcgcgtgagctgcaagcttttctcaccaagccccagtactgcgtcccatac
ctgcagccagggcgcatggtacatataaacaatggcaatgacgattttggctggggtgtg
gtcgtcgcctactcgaagaaaaaagttgtcactgcacgaggacagtctggcctcaaggac
cccgtggtgattgtggacgtgctcctcaacgtttccaaggaaagtgcccagacaaaactg
acgtcaaagttgactcctcccaagccgggcgagaaaggggaagtgcaggtggttccactg
accatcgacaacatcaccaagatgagctcgattcgtctgttctacaaccaggacctcaaa
tcctctgacaacagagccgcagtgctcaagtcaatcaaggaggttgaagagagatttcca
aaaggcatcccacttgtcgacccttttgaggacctcaacatcaaggacgcgaacatgaag
gaagttgtcaagaaaatcgaggcattcgagaaccggatgtacgctcatccgatgcattcg
catccagaccttccaaagatttatgcggaatacgagaagaaaatgaaggttgcgcaggag
atcagggaggttaagaacgagctcaagaaggccaaggcgctgctccaaatggaggaactc
aagtgccgcaagcgagttctccggcggctcggctatgccacggcctccgatgtcatggag
atcaagggcaaggtcgcctgcgaagtcagcagtgctgacgaactgcttgtgaccgagatg
atcttcaacaacatgttcaacgagctcaacgcacaccaggcgactgccttattgagttgc
ttggtctttcaagagaagtcgaacgagatgcctaacctcactgaggagctctctggccct
ctgcgacagatgcaggacatagcgcggaggatagcacgggtgaccaaggatgccaagctg
tgcatagacgaggacacttacgtcagctcgttcaagccacacctgatggacgtcatctac
gcctggagcaaaggagccacctttgcacacgtctgccgcatgacggatgtctttgaagga
agcataatcaggtgcatgcgacgactggaggaactgttgcggcagataattcaggctgca
aagtgcatagggaacacggaactggaaaacaagttttcagaagccgtcaagctcatcaag
agggacattgtgtttgcagccagcttgtacctatag
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integrated database retrieval system
