Rhipicephalus sanguineus (brown dog tick): 119406888
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Entry
119406888 CDS
T07382
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rsan
Rhipicephalus sanguineus (brown dog tick)
Brite
KEGG Orthology (KO) [BR:
rsan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsan03016
]
119406888
Enzymes [BR:
rsan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
119406888
Transfer RNA biogenesis [BR:
rsan03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119406888
Prokaryotic type
tRNA splicing ligases
119406888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
119406888
NCBI-ProteinID:
XP_037529588
LinkDB
All DBs
Position
10:complement(5518994..5550702)
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AA seq
506 aa
AA seq
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MGVRSYNEELGYLEKMTPVSWRIKKGFVPNMKVEGIFYVNNLLEKLMFEELRNSCRPGNV
GGFLPGVKQIGNVAALPGIVGHSIGLPDIHSGYGFAIGNMAAFDMDDPKAIVSPGGVGFD
INCGVRLLRTNLMEKDVQPIKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLNADPAKVSMKAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KNNAAKMGIERCGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDKIDVNDRQLACALIR
STEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKAYNTTPDDLDMHVIYDVSHNIAKVE
QHVVDGKMRTLLVHRKGSTRAFPPHHPLIPVDYQLSGQPVLIGGTMGTCSYVLTGTEQGM
AETFGTTCHGAGRALSRAKSRRNLDYQDVLDKLNEMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHEAGISRKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccgcagctacaatgaggagctcggatacctcgaaaaaatgacacccgtctca
tggcgtatcaagaaaggcttcgtgccgaatatgaaggttgaagggattttctacgtgaat
aacctcttggagaagctgatgttcgaagagctgcggaattcgtgccgtccaggaaatgtt
ggtggtttcctgcctggtgttaaacaaattggaaatgtggccgccttgcctggaatcgtt
ggacactcaatagggctccctgacatccattctggttatggctttgcaattggcaacatg
gcggcatttgacatggatgatccaaaggccattgtgtcacctggtggcgtgggctttgac
atcaattgcggtgtccgtctgttgcgaaccaacttgatggagaaggatgttcagcccatc
aaggaacagttggcacagagtatgttcgaccacattcctgttggtgtcggctctaaggga
atcattcccatgaatgcaagagacctcgaagaagccttggagatgggcatggattggtcc
ttaagagaaggctatgcctgggctgaggataaagaacactgtgaggagtatggacgaatg
ctgaatgctgaccctgccaaggtttctatgaaagcaaagaaacggggcctgcctcagctg
ggtaccttgggtgctggcaatcactatgccgagattcaagtggtggacgagatttacgac
aagaacaatgcagctaagatgggaattgaacgttgcggtcaagtatgcgtcatgatccac
agtggcagtcgaggctttggacaccaagtggctactgacgcattggtggccatggagaaa
gccatgaagcgggacaagattgatgttaacgatcggcagctggcctgcgcccttatccgc
tccactgagggacaggactacctgaagtcgatggcagccgcagcaaactttgcctgggtc
aatcgcagcagcatgactttcctgagccgtcaggcatttgccaaagcatacaacacgacc
ccggacgacctggacatgcacgtgatctacgacgtgtcgcacaacattgccaaggtggag
cagcatgtggtggatggcaaaatgcgcacactgctcgtgcaccgcaaaggctccacacga
gcctttccacctcatcatcctctcatccctgtggactaccagctgagtggccaaccggtg
ctgattggtggcacaatgggcacctgcagctacgtcttgacgggcaccgagcaaggcatg
gctgagacattcggcaccacctgtcacggtgctggccgcgcactttctcgggccaagtcg
cggcgaaacctcgactaccaggacgtactggacaagctgaacgagatgggcatctcgatt
cgcgtggcatcaccaaagctggtcatggaggaggctccagagtcgtacaagaacgtgacg
gacgtcgtaaacacgtgccatgaggctggcatcagccgcaagtgcatcaagctcaggccc
attgccgtcatcaagggctga
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