Rhodoferax saidenbachensis: RS694_01025
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Entry
RS694_01025 CDS
T04623
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rsb
Rhodoferax saidenbachensis
Pathway
rsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RS694_01025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsb03019
]
RS694_01025
03400 DNA repair and recombination proteins [BR:
rsb03400
]
RS694_01025
Enzymes [BR:
rsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RS694_01025
Messenger RNA biogenesis [BR:
rsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RS694_01025
DNA repair and recombination proteins [BR:
rsb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RS694_01025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DNApolII_insertion
HHH
Motif
Other DBs
NCBI-ProteinID:
APW44633
UniProt:
A0A1P8KF30
LinkDB
All DBs
Position
complement(203612..205480)
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AA seq
622 aa
AA seq
DB search
MDACHDILRTVFGYPAFRGPQQAIVEHVAEGGDALVLMPTGGGKSLCYQIPAIARQQAGH
GITLVISPLIALMHDQVGALHEAGVSAAFLNSTLTGDEAYQIEQQLLRGEITLLYAAPER
VSNARFLALLDSLFERGKLGLFAIDEAHCVSQWGHDFRPDYRNLTVLHERYPGIPRIALT
ATADDLTRADILERLQLEDARAFVSSFDRPNIRYTIVEKKDATLQLLRFIEREHEGEAGI
VYCQSRKKVEDMAQTLVDAGIKALPYHAGLDQKVRQTNQDRFLREDGIVMVATIAFGMGI
DKPDVRFVAHLDMPKNIEGYYQETGRAGRDGLPAQAWMGYGLQDVVNQRRMIDESPAGEE
FKQVMRGKLDALLGLAEATDCRRVRLLSYFGEPSQPCGNCDNCINPPEIWDGTDAARKLL
STIYRIQQMSGISFGAGHLMDIVRGKKTDKVAQFGHDTLSTFGLGASFSETQLRGVLRQL
IATGAVGLHKVAMDNGHSFDTLELTEGSRAVLKGEVQVGLRESASGPAERKSKRSARLGA
VVKAPIALDSEALLRYSALKAWRAEVAKEHNLPAYVIFHDATLAAIAQRAPQSLDDLQGI
SGIGAKKLEAYAHEVLRVVSLQ
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
ctggacgcctgccacgacattctgcgcacggtgtttggctaccccgcatttcgcggcccg
cagcaggccatcgtggaacacgtggccgaaggtggcgatgcgctggtgctcatgcccacg
ggtggcggcaaatcgctctgttaccagatccccgccatcgcgcgccagcaggccgggcac
ggcatcaccctggtcatctcgccgctgattgcgctgatgcacgaccaggtgggcgcactg
cacgaggccggtgtcagcgccgcctttctgaactccacgctcactggcgacgaggcctac
cagatcgaacagcaattgctgcgcggcgagatcaccctgctctacgccgcaccggagcgg
gtgagcaatgcccgttttctggcgctgctggattccctgtttgagcgcggcaagctcggc
ttgttcgccattgacgaagcgcattgcgtcagccagtggggccacgacttccggcccgac
taccgcaacctcacggtgctgcacgagcgttaccccggcattccccgcatcgccctcacg
gccacggccgacgacctgacccgggccgacatcctggagcgcctgcagctcgaagacgca
cgcgcctttgtcagcagctttgaccgccccaacatccgttacaccatcgtcgagaagaaa
gacgccacgctgcaactgttgcgttttatcgaacgcgagcacgaaggcgaggccggcatc
gtctactgccagagccgcaaaaaggtggaagacatggcgcaaacgctggtggacgccggc
atcaaggccctgccctaccacgcaggcctggaccagaaggtacgccagaccaaccaggat
cgctttctacgcgaagacggcatcgtcatggtggccaccatcgcttttggcatgggcatc
gacaagcccgatgtgcgttttgtcgcccacctggacatgcccaaaaacatcgaaggttac
taccaggaaaccggccgcgcggggcgcgacggcctgccagcccaggcctggatgggctat
ggcctgcaggacgtggtgaaccagcgccgcatgatcgacgagagcccggccggcgaggaa
ttcaaacaggtgatgcgcggcaagctcgacgccctgctgggcttggccgaagccaccgac
tgccgccgcgtgcgcctgctcagctactttggcgagccaagccagccttgcggcaactgt
gacaactgcatcaacccgcccgaaatttgggatggcaccgacgcagcacgcaagctgctg
tccacgatttaccgcatccagcagatgagcggcatcagctttggtgccgggcatttgatg
gacatcgtgcgcggcaagaaaaccgacaaggtcgcacagttcggccacgacaccttgagc
acctttggcctgggcgcctcgttcagcgagacgcaattgcgcggcgtgctgcgccagctg
atcgccaccggggccgtgggcctgcacaaggtggcgatggacaacggccacagtttcgac
acgctggagttgacggaaggctcacgcgccgtgctcaaaggcgaagtgcaggtgggcttg
cgcgaatccgcctcgggcccggcggagcgcaagagcaaacgcagcgcacgcctgggtgcg
gtggtcaaggcgccgatcgcgctggacagcgaggccctgctgcgctactccgcgctcaaa
gcctggcgcgccgaagtggcgaaggagcacaacctgcctgcctatgtaatttttcacgac
gccacgctggccgcaattgcccagcgggcgccgcagtccctggacgacctgcaggggatc
agcgggattggggcgaagaaactggaagcctacgcgcacgaggtgttgcgcgtggtgtca
ctgcagtag
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