Rhodoferax saidenbachensis: RS694_07100
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Entry
RS694_07100 CDS
T04623
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rsb
Rhodoferax saidenbachensis
Pathway
rsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RS694_07100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsb03019
]
RS694_07100
03016 Transfer RNA biogenesis [BR:
rsb03016
]
RS694_07100
Enzymes [BR:
rsb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RS694_07100
Messenger RNA biogenesis [BR:
rsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RS694_07100
Transfer RNA biogenesis [BR:
rsb03016
]
Prokaryotic type
tRNA degradation factors
RS694_07100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
APW42328
UniProt:
A0A1P8K8J8
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All DBs
Position
1477451..1479712
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AA seq
753 aa
AA seq
DB search
MLDEVEGVVQGHRDGHGFVARDDGAPDIYLPPNEMRAVLHKDRVKVRIVRSDRKGRPEGR
VAEIIERSTQPIIGRLLQESGVWLVAPEDKRYGQDVLIPKGATSVAKAGQVVVVELVEPP
ALFGQPVGRIKEVLGEVDDPGMEIEIAVRKYSVPHEFSEACVALARTLPDKVRPEDRSHR
VDLTDVPLVTIDGEDARDFDDAVYCEPATKGRGKSAVKGWRLLVAIADVSHYVETGSAID
VDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVERLCMVCDMFVTADGEVEAYQFYPA
LMWSHARFTYTEVAAILGNTRGPEAQKRKERVGDLLNLHGVFQALLKSRQKRGAVDFETT
ETQIICDENGRIEKIVPRTRNVAHRVIEEAMLAANVCSADFIAQSKHFGLFRVHEGPTPE
KKEILRNYLKASGVGMTISDDPAPGEFQAIANATKDRPDAQQIHSMLLRSMQQAIYTPIN
SGHFGLAYDAYTHFTSPIRRYPDLLVHRVIKAILAKTRYQLPTLPTPGEAHAKLARRLEK
GLASKVGEPGIKPKKTNAEGMAWAAAGLHCSANERRADEASRDVEAWLKCKYMREHLGEE
YGGVVTSATTFGLFVTLDAMYVEGLVHITELGGEYFRFDEARQELRGERTGIRYAIGTRV
RIQVSRVDLDGRKIDFRLVQEGQSLQPRPGPDKGPQREGKVRGEFADRADAEMPGNTSYK
SKVRQHTSAKPARNAKAEPKTSSAPKKAAKKRR
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
ctgctggacgaagttgaaggcgtcgtgcaaggccaccgcgacgggcacggtttcgtagcc
cgcgacgacggtgcccccgacatctatttaccccccaatgaaatgcgcgcggtgctgcac
aaggaccgcgtcaaggtacgcattgtgcgcagcgaccgcaagggccgacccgagggccgc
gttgccgagatcattgagcgttccacgcaacccatcattgggcggctgctgcaggaaagc
ggcgtatggctggttgcgcccgaagacaagcgctacggccaggatgtgctcatccctaag
ggggctaccagcgttgcgaaagcagggcaggtggtggtggtggaactggtggagccgcca
gccttgtttggccagcccgtggggcgcatcaaggaagtgctgggtgaggtagacgatccc
ggcatggagattgaaattgccgtgcgcaagtacagcgtgccgcacgagttctcggaagcc
tgtgtggccctggcgcgcacgctgccggacaaagtgcggcccgaggaccgcagccaccgt
gtggatttgaccgatgtgcccttggtcaccattgatggtgaagatgcgcgcgattttgac
gatgctgtgtattgcgaaccggccaccaaaggccgcggcaagtctgccgtcaaaggctgg
cgcctgctggtggccattgccgatgtaagccactatgtggaaaccggatcggccatcgac
gtcgatgcctacgaccgtgccaccagtgtgtatttcccgcgccgggtgattcccatgctg
ccggaaaaactctccaacggcctgtgttcgctgaacccggaagtcgaacgcctgtgcatg
gtgtgcgacatgtttgttacggcggatggcgaggtcgaggcgtaccagttttacccggcg
ctgatgtggagtcacgcacggttcacctataccgaggtggccgcaatcctgggcaacacc
cgtgggccggaggcgcaaaaacgcaaggaacgtgtgggtgacctgctgaatctgcatggt
gtgttccaggccttgctgaagtcacgccagaagcgtggcgcggtggactttgaaaccact
gagacgcagatcatttgcgacgagaacgggcgtattgaaaagatcgtgccccgcacccgc
aatgtggcccaccgcgtgattgaagaggccatgctggcggccaacgtgtgcagtgcagac
ttcattgcccagagcaaacattttggcctgttccgtgtgcacgaagggccaacgcccgag
aagaaggaaatcctgcgcaactacctgaaggccagtggcgtgggcatgacgatcagcgac
gatcccgcgccgggtgagttccaggccattgccaacgccaccaaggatcgcccggacgcg
cagcaaatccactcgatgttgttgcgctccatgcagcaggcgatttacacgcccatcaac
agcggccactttggcttggcgtacgacgcgtatacccacttcaccagcccaatccggcgt
tatccggatttgctggtacaccgggtgatcaaggcgattctggccaagacgcgttaccag
ttgcccacgttgccgacaccgggtgaagcccatgccaagctggcgcgccggctggaaaaa
ggtctggcgtccaaggtgggcgagccgggcatcaagcccaaaaagaccaatgccgaaggc
atggcctgggcggcagccggcttgcattgcagtgccaatgagcgccgtgccgacgaagcc
agccgtgacgtggaagcctggctcaagtgcaagtacatgcgcgagcatctgggtgaggaa
tacggcggtgtggtcacctcggccacgacgtttggcttgtttgtcacgttggacgccatg
tatgtggaaggcctggtacacatcaccgagttgggcggtgaatacttccgctttgacgag
gcgcgccaggaactgcgcggtgaacgcaccggcatccgttacgccatcggtacgcgggtg
aggattcaggtgagccgtgtggacctggacggtcgcaagatcgatttccgtctggtgcag
gaggggcaaagcttgcaaccgaggcctggccctgacaaagggccacagcgcgaaggcaag
gtccgcggcgagtttgcggaccgagccgatgcggagatgcccggcaacaccagctacaaa
agcaaggtgcgccagcacaccagtgccaaaccggcacgtaacgccaaggccgaacccaag
accagttccgcgccgaagaaagcagccaaaaagcgacgctaa
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