Rhodoferax saidenbachensis: RS694_09375
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Entry
RS694_09375 CDS
T04623
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rsb
Rhodoferax saidenbachensis
Pathway
rsb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RS694_09375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsb03400
]
RS694_09375
Enzymes [BR:
rsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RS694_09375
DNA repair and recombination proteins [BR:
rsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RS694_09375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
APW42723
UniProt:
A0A1P8K9Q2
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All DBs
Position
complement(1955002..1958559)
Genome browser
AA seq
1185 aa
AA seq
DB search
MDLPKLTGGKRFTLPRPAGSADALLLARLGEREKAAGLPLVIVTADANDAQRLLEEIAFF
APLLRCALFPDWETLPYDTFSPHQDLISERLATLWRISQRDKETGADVVIVPATTALYRL
APPSFLAGYTFQFKVKQKLDEAKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSP
VPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEIRLLPGREFPMDDDARAKFRSRWRELLDG
DPTKSRIYKDMGNGVATAGIEYYLPLFFEETATVFDYVGADATVVLHGDLEPAFQRFWQD
TKDRYRLVQGDPERPALPPETLFLGTEQFYARANAHAQLAIRPIPVRPEPVEGLARSSTG
SDRTDLDGSGRTDYVDIETLPPLSVVRGAEDPLAALKTHARNTQHRILVLAESDGRRESL
LDFLRASGINPPAFDSLAEFEASDEKFGIATAALTVGFGWLETGIDFVTETELFATGPTT
RRRKKQEQVSDVEALIKDLSELNLGDPVVHSAHGIGRYKGLVNLDLGNKNAQGEPELQEF
LHLEYADKATLYVPVSQLQLISRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAEL
LNIYARRAAREGHAFRYSPSDYETFANDFGFEETADQKAAIHAVIQDMISPRPMDRLVCG
DVGFGKTEVALRAAFIAITGGKQVAFLAPTTLLAEQHYQTLVDRFSKWPVKVAEMSRFRS
GKEITAALKGVADGTIDIVVGTHKLLSQDTKFKDLGLLIIDEEHRFGVRHKEAMKELRAE
VDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRTEGAGVIREAVLRELKR
GGQVYFLHNEVETIENRRAKLEELLPEARIAVAHGQMPERQLESVMRDFIAQRYNLLLCS
TIIETGIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQATQ
RLDAIQAMEELGSGFYLAMHDLEIRGAGEVLGDNQSGNMLEVGFQLYNEMLSEAVRCLKN
GEEPDLLSPLNVTTEINLHAPALLPNDYCGDVHLRLSFYKKLATAKNPDQIDSLLEEIVD
RFGKLPPQAQTLIDVHRLRVIAKPYGVVKVDAAPGVISITFKKNPPIDPMKIIGLIQKNK
HIKLAGNEKLRIERELPEVKDRAQMVRDILKSLGQPVVEAVTTGQ
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggatttacctaaactcacaggcggcaagcggtttaccctgccgcgcccggccggttcg
gccgatgccctgctcctggcccgcctgggcgaacgcgaaaaagctgccggtctgccgctg
gttatcgtcaccgcagacgcgaatgacgcccagcgcctgctcgaagaaatcgccttcttc
gcccccctgctccgctgcgcgctgttccccgactgggaaaccctgccctacgacacgttt
tcgccgcaccaggatttgatcagcgaacgtctggccacgctgtggcgtatcagccagcgc
gacaaggaaaccggtgccgacgtggtcatcgtgcccgccaccaccgcgctgtaccgcctg
gcgccgcccagctttctggcgggctacaccttccagttcaaggtcaagcaaaagctcgac
gaagccaagctcaaagcgcaattgacgctggctggctacagccatgtgacccaggtggtg
agccccggtgaatacgcggtacgtggcgggctgatcgacctgttccccatgggcagcccc
gtgccctaccgcgtggacttgttcgacgacgagatcgacagcatccgcacgtttgacccc
gacagccagcgcagcctctaccccgtgcccgaaatccgcctgctgcccgggcgagagttc
ccgatggacgacgacgcacgcgccaagttccgcagccgctggcgcgagctgctggacggc
gacccgaccaaaagccgcatctacaaggacatgggcaacggcgtggcgaccgccggcatc
gagtactacctgccgcttttctttgaagaaacggccaccgtgtttgactacgtgggtgcc
gatgccaccgtggtgctgcacggcgacctggaaccggccttccagcgcttctggcaggac
accaaggaccgctaccgcctggtgcagggcgaccccgagcgcccggcgctgccgcctgag
acattgttcctgggtaccgagcagttctacgcccgcgccaatgcgcatgcacaactggcg
atccgaccaatccccgttcgccctgagcctgtcgaagggctcgcgaggtcttcgacaggc
tcagaccgaacggacttggatggctcagggcgaacggactatgtggatatcgagacattg
ccccccttgagcgtggtgcgcggtgccgaagacccgctggctgcgctgaaaacccacgcg
cgcaacacccagcaccgcatcctggtgctggccgagagcgatggtcggcgcgaaagtctg
ctggacttcttgcgcgccagcggcatcaacccgccggcgtttgattcgctcgccgagttt
gaggccagcgatgaaaaattcggcattgccaccgccgcgctgacggtcggctttggctgg
ctagagaccggcatcgacttcgtcaccgaaaccgaactgtttgctactggccccaccaca
cgccgacgcaagaagcaggagcaggtcagcgacgtcgaggcgctgatcaaggacctgagc
gaactcaacctgggcgacccggtggtgcacagcgcgcacggcattggtcgttacaaaggg
ctggtcaatctggacctgggcaacaaaaacgcccagggcgaacccgagctgcaggaattc
ctgcacctggaatacgccgacaaagccacgctctatgtgccggtgagccagttgcagttg
atcagccgttacaccggcgtcagcgcagacgaggcaccgctgcacaagctgggcagcggc
caatgggaaaaagccaaacgcaaagccgccgaacaggtgcgcgacagtgcggccgagctg
ctgaacatctacgcccgccgtgctgcgcgtgaaggccatgccttccgctacagcccctcc
gactacgaaaccttcgccaacgactttggttttgaagaaaccgccgaccagaaggccgcc
atccacgccgtcatccaggacatgatcagcccgcgcccgatggaccgcctggtctgcggc
gatgtgggctttggcaagaccgaggtggcgctgcgcgctgcgttcatcgcgatcaccggt
ggcaagcaggtggcgtttctggcacccaccacgctcttggccgagcagcattaccagacg
ctggtggaccgtttcagcaagtggccggtcaaggtggcagagatgagccgctttcgctct
ggcaaggaaattactgctgcgctcaagggcgtggccgacggcaccatcgatatcgtggtc
ggcacccacaaactgctgagccaggacaccaagttcaaggacctgggcctgctgatcatt
gacgaagaacaccgctttggcgtgcgccacaaggaagcgatgaaggaattgcgcgccgaa
gttgatgtgctcacgctgactgccacgcccatcccccgcacactgggcatggcactggaa
ggcctgcgcgatttgagcgtcatagccaccgcaccgcaacgccgcctcgccatcaagacc
tttgtgcgcaccgaaggcgcaggcgtaatccgcgaggccgtgctgcgcgagctgaaacgc
ggtgggcaggtctattttttgcacaacgaggtggagacgattgaaaaccgccgcgccaag
ctcgaagaactgttgcccgaggcgcgcattgccgtggcccacggccaaatgccggagcgg
cagttggaaagcgtgatgcgcgacttcatcgcccagcgctacaacctgctgctgtgctcc
acgattattgagaccggcattgacgtgcccacggccaacaccatcgtcatgagccgtgcc
gacaagttcggtctggcgcagttgcaccaattgcgcgggcgcgtgggccgcagccaccac
caagcctatgcctacctgatggtgcccgacattgaaggcctgaccaaacaagcaacccaa
cgtctggacgccatccaggccatggaagaactgggcagcggcttttacctggccatgcac
gacctggagattcgcggtgccggtgaggtgctcggtgacaaccagagcggcaatatgctg
gaagtgggcttccagctctacaacgagatgttgtccgaggccgtgcgctgcctcaagaac
ggcgaggaaccggacctgttgagcccgctcaacgtcaccaccgaaatcaacctgcacgcg
ccagcgctgttgcccaacgactactgcggcgatgtacacctgcgcctgtcgttctacaag
aagctggccacggcgaagaaccccgaccagatcgacagcctgctcgaagaaatcgtcgac
cgttttggcaagctgccaccccaggcgcagacgctgatcgacgtgcaccgcctgcgcgtc
atcgccaagccctatggcgtggtcaaggtggacgcggcgcccggcgtgatcagcatcacc
ttcaagaaaaacccgccgatcgacccgatgaagatcatcggcctgatccagaagaacaaa
cacatcaagctggccggcaatgaaaagctgcgcatcgagcgcgagctgcccgaggtgaaa
gaccgtgcgcaaatggtgcgcgacattctcaagagcctgggacagcccgtggtagaggcg
gtgactactggccaataa
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