Rhodoferax saidenbachensis: RS694_17130
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Entry
RS694_17130 CDS
T04623
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rsb
Rhodoferax saidenbachensis
Brite
KEGG Orthology (KO) [BR:
rsb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsb03016
]
RS694_17130
Enzymes [BR:
rsb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RS694_17130
Transfer RNA biogenesis [BR:
rsb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RS694_17130
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
APW44085
UniProt:
A0A1P8KDM1
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All DBs
Position
3583614..3585668
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AA seq
684 aa
AA seq
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MFVLFEEAGKFMAGRVLSEAEASAQVELDSGKRVKVKSANILIKFEKPAPAELIAAAQAQ
AQAIELEMAYEFSPDEEFGFADLARDYFSAQATLTEQAGMLFKLFDTPHYFRRAGKGRFK
KAPADIIAQALAAIEKKRVIAEQITQWAAELGAGTCPDAIKEQLYKILFKPDKNAPEYKA
VVEASRATHTAPLELLQKAGAIASPYLFHWKRFLLENFPKGTGFPAITAPAIADELPLAP
VQAYSIDDSQTTEIDDALSLQGLGSGTVTIGIHIAAPGLAVQPGSPIDVLGRARLSTVYM
PGYKVTMLPDDVVQTYTLQEGRDCPALSLYVTLDEATLEIKGSETKLERVPIAHNLRHDQ
LDAVVTEPWLLDPAFEHQMTPQPLPTLREQLSFLYRLARDLKAKREVVRGKPETFNRPDY
NFRLVREAGAQGTEPQGHEEVQISIRQRGAPLDLIVAEAMILANSTWGNLMAEMGVPAIY
RSQASLAPGVKVRMGTKALPHAGIGVKSYAWATSPLRRYTDLVNQWQIMACARHGKTAAL
VAPFKPKDAELFAIISAFDTAYSAYNGYQGAMERFWTMRYVQQHGITELVATVFKENMVR
ADDIPLVLPVMGAQGLPRNAKVRIKLGEMDLITLDVNGTVIERLDAPAQTEAATEEEADD
EDDVAGPIAIAVDVSESPEATSDN
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtactgtttgaagaagccggaaagttcatggccggtcgtgtgctgtcggaggcg
gaagcctctgcacaggtggagctggattccggcaagcgcgtcaaggtcaagagcgccaat
atcctcatcaaattcgagaagcccgccccggcggagctgatcgcggccgcccaggcccag
gcccaggccattgagctggagatggcctatgagttttcgccggacgaagaatttggtttt
gccgacctggcccgcgactatttttcggcccaagccacgctgaccgagcaggccggcatg
ttgttcaagctgttcgacacgccgcactacttccgccgcgcgggcaagggccgtttcaaa
aaggcccccgccgacatcattgcgcaggcgttggccgcgattgagaagaaacgcgtgatt
gccgagcagatcacccagtgggcggccgaactgggcgcaggcacctgcccagacgccatc
aaggaacagctctacaagatactgttcaagcccgacaaaaacgcgcccgaatacaaggcc
gtggtcgaggccagccgcgccacccacaccgcaccgctggaactgctgcaaaaggccggc
gccattgcctcgccctacctgttccactggaagcgctttttgctggagaacttccccaaa
ggcacaggcttccccgccatcaccgcgccggccattgcggacgagttgccactggcaccg
gtgcaggcctattcgattgacgattcacagaccaccgagattgacgacgcgctgagcctg
cagggcctgggcagcggcacggtcaccatcggtatccacattgcggcacccggcctggcc
gtccagcccggcagccccatcgacgtgctgggccgcgcgcgcctgtccacggtctacatg
ccgggctacaaggtgaccatgctgcccgacgacgtggtgcaaacctacacgctgcaggaa
ggacgtgactgcccggccctgtcgctgtacgtgacgctggacgaagcgacgctggagatc
aagggcagcgagaccaagctggagcgcgtgccgattgcgcacaacctgcgccacgaccag
ttggacgccgtggtcaccgagccctggctgctggaccccgcgtttgagcatcaaatgacg
cctcagcccttacctacattgcgtgagcagctatcatttttataccgcctggcgcgtgac
ctgaaagccaaacgcgaggtcgtgcgcggcaaacccgagacctttaaccggccggactac
aacttccgcctggtgcgtgaggccggtgcacaaggcaccgaaccgcaaggccatgaagaa
gtgcagatcagcatccgccaacgcggcgcgccgctggacctgatcgtggccgaggccatg
atcctggccaacagcacctggggcaatctgatggccgagatgggcgtacccgccatctac
cgcagtcaggccagcctggcacccggcgtcaaggtgcgcatgggcaccaaggcgctgccg
cacgcgggcattggcgttaaaagctacgcttgggcgacttcgccgctgcgccgctacacc
gacctggtgaaccagtggcaaatcatggcctgcgcccgccacggcaagaccgccgcactg
gtggcaccgttcaagcccaaggatgccgaactgttcgccatcatctcggcctttgacacg
gcctacagcgcctacaacggctaccagggtgcgatggagcgcttctggaccatgcgttac
gtgcagcaacacggcatcaccgagctggtggccacggtgttcaaggagaacatggtgcgt
gccgacgatattccgctggtgctgcccgtcatgggcgcgcaaggcctgccacgcaacgcc
aaggtgcgtatcaagctgggcgagatggacctgatcacgctggacgtgaatggtacggtg
atcgagcgtctggacgcaccggcccagaccgaagcagcgacggaagaagaggcggacgat
gaagacgatgtggccggcccgattgcgattgccgtggatgtgagcgaaagccccgaagcg
accagcgataattag
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