Ralstonia solanacearum CFBP2957: RCFBP_11190
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Entry
RCFBP_11190 CDS
T01272
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rsc
Ralstonia solanacearum CFBP2957
Pathway
rsc03030
DNA replication
rsc03430
Mismatch repair
rsc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RCFBP_11190 (dnaE)
03430 Mismatch repair
RCFBP_11190 (dnaE)
03440 Homologous recombination
RCFBP_11190 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsc03032
]
RCFBP_11190 (dnaE)
03400 DNA repair and recombination proteins [BR:
rsc03400
]
RCFBP_11190 (dnaE)
Enzymes [BR:
rsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RCFBP_11190 (dnaE)
DNA replication proteins [BR:
rsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RCFBP_11190 (dnaE)
DNA repair and recombination proteins [BR:
rsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RCFBP_11190 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Ski2_N
Motif
Other DBs
NCBI-ProteinID:
CBJ42487
LinkDB
All DBs
Position
1232540..1236070
Genome browser
AA seq
1176 aa
AA seq
DB search
MNPPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGK
GVKPVVGADVWITNHDERDKPSRLLLLVRNKQGYLNLCTLLARAWLSNQHRGRAEIAPEW
FDEPGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQAFYIELQRA
GQAGTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDLLANPRRTRR
FSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYL
VHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAK
NNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRD
RVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVT
LEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYT
QGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSKADWNCSHIPL
TDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCA
RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAE
EMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH
PAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFTPTDAKTIRYGLGG
VKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRAQL
LVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPWTTKRKLQEEKQALGF
YLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGNGGGYGSRDARNKTVSGVIVGLR
TQMTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRGLFKEDEVLIVQGNARHDTFTGGV
RMTAESVMDLTQARSRYAEALGLVLRDNASAVRLRELLTPHLATQASGVRVHISYAANGA
CCKAVLGEQWQVTPSDEVLASFRSALSNENVYMIYG
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgccgcgctttgtccatctccgtctccattccgaatactccatcgtcgacggc
aatgtccgcctggacgaggccgtcaaggccgccgccgccgatggcatgggcgccctggcg
ctgaccgatcttgccaacgccttcggcctggtgcgcttctacaaggaagcgcgcggcaag
ggcgtcaagcccgtcgtcggcgccgacgtgtggatcaccaatcacgatgagcgcgacaag
cccagccgcctgctgctgctggtgcgcaacaagcagggctacctgaacctgtgcacgctg
ctggcgcgggcgtggctgtcgaaccagcatcgcggccgcgcggagatcgctcccgagtgg
ttcgacgagcccggcgtggaagacgcgccgctggccaccggcctgctggcattgtccggc
gcgatgggcggcgatgtcggcatggcgctggccaacggcaacgaggcgctggcgcgcaag
ctggcgacgcactggtcgcgcgtgtttccgcaggcgttctacattgagctgcagcgcgcc
gggcaggccggtaccgaggcctacatccagcaggccgtgaagctggccgcgtcgatgcag
ctcccggtggtcgcgacgcatccggtgcagttcatgacgcaggacgacttcaccgcccac
gaggcgcgcgtctgcatcgccgagggtgatctgctggccaacccgcgccgcacccggcgc
ttcagcaccgagcagtatttcaagaagcaggacgagatgtgcgcgctgttcgccgacatc
ccgtccgcgctggccaatacggtgcagatcgcgcagcgctgcaacctgacgctggaactg
ggcaagcccaagctgccgctgttccccacgcccgacggtatgtcgctggacgactacctc
gttcacctggccaaggacgggctggaaaagcgcatggaagtgctgttccccgacgcggcc
gtgcgcgaggccaagcggcccgagtattacgcgcggctggagttcgagaccggcaccatc
atcaagatgggcttcccgggctacttcctgatcgtggcggactttatcaactgggccaag
aacaacggcgtgccggtggggccgggccggggctcgggcgcgggctcgctggtggcgtat
gcgctgggcatcaccgacctggacccgctcaagtacaacctgctgttcgagcgcttcctg
aacccggaacgcgtgtcgatgcccgacttcgacatcgacttctgccagcacggccgcgac
cgcgtcatccattacgtgaaggagaagtacggcaaggacgccgtctcgcagatcgccacc
ttcggcaccatggccgccaaggccgccgtgcgcgacgtgggccgcgtgctggacctgggc
tacaactttgtcgacggcgtggccaagctgatcccgttcaagccgggcaagctcgtcacg
ctggaggaagccaagaaggaagagccgctgctggccgagcgcgaggccaatgaagaagag
gtcaagcagctgctcgaacttgcccagcgtgtcgaaggcatgacgcgcaacgtcggcatg
cacgcgggcggggtgctgatcgcgccgggcaagctgaccgatttctgcccgctctacacg
cagggcggtgaggatgccggcgtcgtcagccagtacgacaaggacgacgtggaagccgtc
ggcctggtcaagttcgacttcttgggcctgaccacgctcaccatcctggactgggccgag
cgctatatccgcatgctcgatccgtccaaggcggactggaactgcagccacatcccgctg
accgacaagccggcgttcgacatcctcaaggccgccaatacggttgccgtgttccagctg
gaaagccgcggcatgcagggcatgctgaaggacgccaagcccgaccgctttgaagacatc
atcgccctggtggctttgtaccgcccgggcccgatggacctgatccccagcttctgcgcc
cgcaagcacggccgcgagaaggtggagtaccccgacccgcgcgtcgagccggtgctcaag
gagacctacggcatcatggtctaccaggagcaggtgatgcagatggcgcagatcgtcggc
ggctactcgctcggcggcgccgacttgctgcgccgcgcgatgggcaagaagaaggccgaa
gagatggccgagcaccgcgagctgttccgcggcggcgcggccaaggacggtctgtccacc
gagaaagccgacgagatcttcgacctgatggagaagttcgcgggctacggcttcaacaag
tcgcacgcggcggcgtatgcgctgctggcgtactacaccgcgtggctcaaggcgcatcac
ccggccgaattcatggcagccaacatgtcgctggccatggatgacaccgacaaggtcaag
atcctctacgacgatgcggccggcaagaatggcctcaaggtgctgccgcccgacatcaac
gccagcctgtaccgcttcacgcccaccgatgccaagaccatccgctacggcctgggcggc
gtgaagggcagcgggcagggcgccatcgaagacatcctgcgcgcgcgcgaagacggtccg
ttcaaggacctgttcgacttctgcgagcgcgtcgatcgccgccaggtcaatcgccgcacc
atcgaagcgctggtgcgggccggcgccttcgacagcctcaacgacaaccgcgcgcaactg
ctggtctcgatcggtctggcgatggaggcggcggaacagaaggcggcagcggccaaccag
gtatcgctgttcgacctgatgagcggcgaggatgccgaggagcatcgccccgagctgctc
gacgaggcgccctggaccaccaagcgcaagctgcaggaagagaagcaggcgctgggcttc
tacctgtcgggccacctcttcgacgaatgccgtgacgaggtccgccgctttgcccggacg
acgctggccgacttggcccgcgaggtcaacggcaatggcaatggcaacggaaatggcggc
ggctatggcagtcgcgacgcgcgcaacaagaccgtgtccggcgtgatcgtcggcctgcgc
acgcagatgacccagcgcggcaagatgatcgtcgtcatgctcgatgacggctcgcagagc
gaggccaccgaagtgacggtcttcaacgagctgttcgatgccaaccgcggcctgttcaag
gaggacgaagtgctgatcgtgcagggcaacgcgcggcacgacaccttcaccggtggggtg
cggatgacggccgagtccgtgatggacctgacccaggcgcgctcgcgctatgccgaggca
ctgggcctggtgctgcgcgacaacgcctccgccgtgcggctgcgcgagctgctgacgccg
cacctggcgacccaggcgtccggcgtgcgcgtgcatatcagctacgccgccaacggcgcg
tgctgcaaagccgtgctcggcgagcaatggcaggtgacgccgtcggacgaggtgctggcc
agcttccgctcagcgctgtcgaacgagaacgtctacatgatctacggctga
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