Candidatus Endomicrobiellum trichonymphae Rs-D17 genomovar Ri2008: TGRD_075
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Entry
TGRD_075 CDS
T00755
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rsd
Candidatus Endomicrobiellum trichonymphae Rs-D17 genomovar Ri2008
Pathway
rsd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rsd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TGRD_075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsd03021
]
TGRD_075
03400 DNA repair and recombination proteins [BR:
rsd03400
]
TGRD_075
Enzymes [BR:
rsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TGRD_075
Transcription machinery [BR:
rsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TGRD_075
DNA repair and recombination proteins [BR:
rsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TGRD_075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BAG13558
UniProt:
B1GZ76
LinkDB
All DBs
Position
139115..143896
Genome browser
AA seq
1593 aa
AA seq
DB search
MVKINFQIKKKKSNGPNFIGFDAVRVSVASPDQIKTWSYGEVKKPETINYRTFKPERDGL
FCNRIFGPTKDWECHCGKYKYIKYKGTICDRCGVEVTESKVRRERFGHINLAVPVAHLWF
LKKPPSRVGILLNMKISDLEKVIYYAKYIVMGDLKDRSGISFFARKGMLMGGEDFNLFKY
GINNPIVKEEFKNIFDGIVCEEIKLDSNLTKALKQLKVLVKGQADSAGISTEEAAKKILE
NVKKGDIYYKVYFKPHSVYYYIDLDPSSHGEIKKILSEKFEKSSTVSITETDKKIRIEFF
DIEKDKIYNDLRKDSFALKKYEGCLRIEILKNKIPFIENFSRSDSFVLLEESDINNIQNG
FGDSLKVNIGAEAVRSLLEEINLDDEMKNIYAEIKKTKSDAERARLLRKLRVVEGFLNSQ
TRPEWMILTVLPVIPPDLRPLVALDGGRFATSDLNDLYRRIINRNNRLRHIEQLKAPIVM
INNEKRLLQEAVDALIDNDSRMRPVTGAGNRILKSLSDTLKGKRGRFRQNLLGKRVDYSG
RSVIVVGPNLRLNQCGIPKEMALELFKPFIVKELIKQENITLRSAKRMLERGDLKVWNIL
EKVTQSHPVLLNRAPTLHRLGIQAFEPVLVEGKSIQLHPLTCSAFNADFDGDQMAVHLPI
SLEAQLEARVLMMATRNILSPASGRPIAVPSQDMVLGNCYLTKEKYGVVGEGKVFSSVSE
AISAYQAEKVDLQARIKVAGITSIRDKNLNNDDEQPDVTKWKNCKSEDDTEIINYTTVGR
IIFNEQLPKNDDGSYALEYQNKSMTKKELVALVDRCYKELGQFKTTVLLDEIKRIGYKYA
TLAGISISIDEMKVPTEKEKMVREAKTKISEIEKQAKLGLITESERYNRIIDIWTRVTDE
ISDIMFDEMRKEETKAYKPGQNRFNSIFMMADSGSRGSRQQVRQLAGMRGLMAKPQKKLT
GGIGEIIETPIISNFREGLTVLEYFISTHGGRKGLADTALKTAEAGYLTRRLVDVAHDVV
VREEDCGTVNGVFIGTLRCGDEIIEKIDERVVGRTALDNVVDIVHDDLIIKRGELITPKK
AEKLVEAGIDKIGIRSVLTCESGHGVCAKCYGVNPATGEQVEMGEAVGILAAQSIGEPGT
QLTLRTFHIGGAASRVVQRSEVYAENNGTVNYYNLKTIQNKDGETIVLSRNAELVYTEYP
VYRKQIYQIPYGAVIKIYDGQTVEIRVNPITGMKKDILIAKWDPHSKPIISEFDGTVNFV
DVKDGVTLQREKSKITGQIERVIIEHSSDRRSPRIVVKKDDGSVVEYPLPVDTTLVVRDK
DRVKSGDILAKIPQEISRTKDITGGLPRVAELFEGRRPRNVAVVSEIDGIVHLVGPTVKG
NVKVEVENPETKMKKSYLVRAGRHLVVYEGDRVKEGEALSDGAINPHDILKVKGPKEVQE
YLVNEIQQVYRLQGVSINDKHIEIIVRQMLSNVRITDSGDSHYLNGEIVSRYKYEIDRKA
IKGKKGKAPIAHSILLGITKASLSSDSFISAASFQETTRILTEAAVSGQVDYLKGLKENV
SIGRLIPAGTGLAAVDIDDNNKFYSREQNDAND
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaataaattttcaaatcaaaaagaaaaagtcaaacggtcccaattttattggt
tttgacgctgtaagagtgtccgttgcaagtcctgatcagataaaaacatggtcttacggt
gaggttaaaaagccggaaactataaattatagaacgtttaagcccgagagagacggtttg
ttctgcaacagaattttcggtcctacaaaagactgggaatgtcattgtggaaagtataaa
tatataaaatacaagggaacgatatgcgacagatgcggcgttgaggtgactgagtctaaa
gtgagaagagagaggttcggtcatattaatcttgcggttcccgtagcccatttatggttt
ttgaagaaaccgccgtcaagagtcggaatacttttaaatatgaaaatttccgatttggaa
aaggttatttactatgcgaaatatatagtaatgggagatttaaaagatcgatcgggaatt
tctttttttgccaggaaaggcatgctcatgggaggagaagattttaatttgtttaagtac
ggaataaacaatcccatagtaaaggaagaattcaaaaatatttttgacggtattgtttgt
gaagaaataaagctcgattccaatttgacaaaagctttgaaacagcttaaagttttagtg
aaaggtcaagctgattcggcgggaatatctaccgaagaagccgcaaaaaagattcttgaa
aacgtcaaaaaaggtgacatttattataaagtttattttaaacctcattcagtgtattat
tatattgatttggatccatcaagccacggagaaataaaaaaaattctttctgaaaagttt
gaaaaaagttctacggtttcaataacggagactgataaaaaaattaggatagaatttttt
gatattgaaaaagacaaaatttacaatgacctcagaaaagattccttcgctctaaaaaaa
tatgaagggtgtcttagaattgagatattaaaaaataaaattccttttatagagaatttt
tcaaggtctgatagttttgttctgcttgaggaaagcgatataaataatattcaaaatggt
ttcggggacagtttaaaagttaatatcggagcggaggcagtgagaagtcttctggaagaa
attaatctggacgatgaaatgaaaaacatttatgcggagattaaaaagacaaaatcggat
gcagaaagagcgaggcttctcagaaaactcagagtagtcgaaggatttttgaattctcag
acaagaccggagtggatgattttgaccgttcttccggtaatccctcccgatttgagacca
ttggttgctttggacggtggaagatttgcaacttctgatttaaacgatttatacagaaga
ataataaacagaaataacagactgcgtcacattgagcaactgaaagctcccatcgttatg
ataaataatgaaaagagacttttgcaggaagcggtcgacgctttaatagataatgattcg
aggatgagaccagtgacgggcgccggcaacagaatactcaagtctctgtctgacacgctt
aaaggcaagcggggacgtttcagacagaatttgctggggaaaagagtcgattattctgga
agaagtgtcatagtggtgggacctaatctgagattaaatcagtgtgggattcccaaagaa
atggctttagaacttttcaagccttttattgtaaaagagttgataaaacaggaaaatata
acgctgagatccgctaagagaatgcttgaaagaggtgatttaaaagtatggaacatactt
gaaaaagttacgcagagtcatcccgttcttttaaatagagctcctacacttcacaggttg
ggcatacaggcttttgaacctgttttggttgaagggaagtcaatacagcttcatcctctt
acatgttccgcttttaatgcagattttgacggggaccagatggcggttcatctgcccata
tctcttgaagcgcagcttgaagcgagagttttgatgatggctaccagaaatatactatca
ccagcttccggaagacctattgccgttccgtcgcaggatatggttttggggaactgctat
cttacaaaagaaaaatacggggtcgtgggtgaaggaaaagttttttcgtcggtaagcgag
gctattagcgcctatcaagcagagaaagtagatttgcaggcgagaattaaagtcgctgga
attacaagtataagagataaaaaccttaataatgatgacgaacaaccagatgttacaaaa
tggaaaaactgcaaatctgaagacgacacagaaattattaattatacgactgtgggaaga
atcatatttaatgaacagcttcctaaaaatgacgatggttcgtacgctttagaataccag
aacaagagtatgacgaaaaaagaactcgtcgcacttgtcgatagatgttataaagagctg
gggcagtttaaaactactgttcttttggacgagataaagaggataggttataaatacgca
acccttgccggtatttctatttctatagacgaaatgaaagttccgactgaaaaagaaaag
atggtgagagaggcaaaaacaaaaatcagcgaaattgaaaaacaagctaagctcggcttg
ataaccgaatcggaacgttacaacagaatcattgatatttggacgagagttaccgacgaa
atctcggatataatgtttgacgaaatgagaaaagaggaaacgaaagcctataagccggga
cagaatcgtttcaattcgatatttatgatggcggattccggatcaagaggttcaagacag
caggtaagacagcttgcgggtatgcgcgggcttatggcaaagcctcagaagaagcttacg
ggaggtatcggtgaaattatcgaaactcctattatctccaacttcagggaaggtcttact
gtgttggagtactttatttcaactcacggaggacgcaaaggtttggctgatactgctttg
aaaaccgcagaagcgggttatctaacaagaagacttgtcgatgtagcgcatgatgttgtc
gtaagagaagaagactgcggaacagtaaacggagtatttatcgggacactgcgctgcggc
gatgaaataattgaaaaaatagacgaacgtgtcgttggcagaacagctcttgacaacgtt
gtggatatcgttcatgacgatctgataataaagagaggagaacttattactcctaaaaaa
gctgagaagcttgttgaagcgggtattgataagattggtatcagaagtgttttgacgtgc
gagtcgggacacggcgtgtgcgcaaaatgttacggcgtaaatcccgctaccggagaacag
gttgagatgggcgaagcagtgggtattctggcggcgcagtcaatcggcgaacccggcaca
cagcttactctaaggacattccatatcggcggagccgcaagccgcgttgttcagcgttcg
gaagtttacgctgaaaacaatgggacagtcaattattataacttaaaaaccattcagaat
aaagatggcgaaactatagttttaagcagaaatgcggaacttgtatatacggaataccca
gtttaccgtaaacagatctatcagataccgtatggtgcggtaattaaaatttatgacggg
cagacagttgaaattagagttaatcccatcacaggaatgaagaaagacatattgatagca
aagtgggatccgcattcaaagccgattatttcggaatttgatggaacggtgaattttgtt
gatgtaaaagacggcgtaactcttcagagagaaaaatcaaaaataaccgggcagatagaa
agagttattattgagcattcttctgataggagaagtcccagaattgttgttaaaaaagac
gatggaagtgtcgtggaatatccgcttccggtggatacgactcttgttgtacgcgacaaa
gacagggttaaatccggcgatattttggcaaaaattccgcaggaaatttcaagaacaaaa
gatattactggcggtctaccgagagttgcggaactgtttgaaggaagaagacccagaaac
gtcgcggttgtttcagagatcgacggtatagttcatttagtcggacctactgtaaaaggt
aacgtaaaagttgaggttgaaaatcctgaaacaaaaatgaaaaagagttatcttgtgcgt
gcagggcgacatcttgttgtttacgaaggtgatagagttaaagaaggtgaagcgctttcc
gacggagcgataaatccgcacgatattcttaaagttaaaggtcctaaagaagttcaagaa
tatcttgtcaacgaaattcagcaggtttacaggcttcagggtgtgtcaattaacgataaa
cacattgaaataatagtaagacagatgttatctaatgtaagaataactgattcaggagac
agccactaccttaacggtgaaattgtttcaaggtacaaatatgaaattgatagaaaagcc
attaaaggaaaaaaaggaaaagctccaattgctcattctattcttttaggcataacaaaa
gcttcattgtcttcagattcatttatttctgccgcgtcttttcaggaaacaacgcgaatt
ttaactgaagctgctgtttcagggcaggttgactatttgaaaggattaaaggagaatgtt
tctataggtcgactgatacctgcaggaacaggacttgcggcggttgatatagacgataac
aataaattttactcgagggaacaaaacgatgccaacgattaa
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