Candidatus Endomicrobiellum trichonymphae Rs-D17 genomovar Ri2008: TGRD_381
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Entry
TGRD_381 CDS
T00755
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
rsd
Candidatus Endomicrobiellum trichonymphae Rs-D17 genomovar Ri2008
Pathway
rsd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TGRD_381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsd03400
]
TGRD_381
DNA repair and recombination proteins [BR:
rsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TGRD_381
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TGRD_381
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
DEAD
UVR
AAA_7
Microtub_bd
NPHP3_N
AAA_22
HEM4
P-loop_SecA
AAA_33
AAA_25
AAA_30
nSTAND3
AAA
Motif
Other DBs
NCBI-ProteinID:
BAG13868
UniProt:
B1H036
LinkDB
All DBs
Position
566678..568696
Genome browser
AA seq
672 aa
AA seq
DB search
MKNEFKLISKFKPSGDQPQAIDKLYHNYLNNKNSQILLGVTGSGKTFVMASVIEKLQKPT
LIISPNKILAAQTYAEFKAFFPNNSVEYFISYYDYYQPEAYIPSSDTYIEKDASINDHID
RLRLKATTSILERKDVIVVASVSCIYNLGSPKDYQNMCVEIIAGKEKTISLLLTELIASR
YERNEVEFKRGKFRVKGDTVEIFPAYLETAVKIEFCGDTVERIKEFNPVTGEVISKKDKA
YIYPAKLFVTDKYKVDKALKTIQIELNTRLEVLKSQNKFLEAQRLEQRTKYDIEMLKETG
SCNGIENYSRHLSGGLSGAKPTTLIDYFVQENDDFLIITDESHISLPQIRGMYEGDRSRK
QTLVDFGFRLPSALDNRPLKFQEFEKVIRKFMMVSATPGTYELNRSKKYIVDLIIRPTGL
VDPEIVIRPISGQIQDLMQEIRKNVEKKQRTLVTTLTKKMSEDLAAYLKEKGFKVEYLHS
EIDTLTRIEILKNLRLGKFDVLVGINLLREGLDLPEVSLVVVLDADKEGFLRSEPTLIQI
CGRAARNIDGRVIFYADTVTGSMQRALREMNRRRDKQLEHNKKNNIKPKSIIKAVHELDE
FRNLSREESMNHIVAEEQLNYNITPKNIGNIIKEVELQMRESADNLDFESAAALRDRMLE
LKNMKSCKSSKR
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatgaatttaaactgatttcaaaattcaaaccgtccggtgaccagccgcaggct
atcgataagctgtatcataattatttaaataataaaaactcgcagattttgcttggcgtt
acaggttcgggaaaaacatttgttatggcaagcgttattgaaaaacttcagaaacctacg
cttataatatcgccgaacaaaattttagcagcgcagacttatgctgaatttaaggctttt
ttcccaaataattccgtagaatattttatatcttattacgactattaccagcctgaagcc
tatattccttcaagcgacacatacatagaaaaagatgcgtcaataaatgaccatatagac
agattgcgtttaaaagcgactacttctattcttgagagaaaagatgttattgtagtcgct
tctgtttcgtgtatatataatctgggatctcctaaagattatcaaaatatgtgcgttgaa
ataattgctggaaaagaaaaaacaataagtctgcttttaacagaacttattgcaagccgt
tatgagagaaatgaagttgaatttaaaagggggaagttcagggtaaaaggcgatactgtt
gaaatttttcccgcttaccttgaaactgccgtaaaaattgagttttgcggcgatacggtt
gaaaggataaaagaatttaatccggtaactggtgaagtaattagtaaaaaagataaagcc
tatatttatcctgcaaaactttttgtcactgataagtataaggttgataaagctttaaaa
accatacagatagaattgaatacgcggcttgaggtattaaagtctcaaaataaatttctt
gaagcacagcgtcttgaacagagaacgaaatacgatattgaaatgttaaaagaaaccgga
tcgtgcaatgggattgaaaactattcaagacatctttcaggcggtctgtcgggagctaaa
ccgactactcttatagattatttcgtgcaggaaaatgatgattttttaataataactgac
gaatcgcatatttctcttccgcagataagaggaatgtatgaaggcgacaggagcagaaaa
caaactcttgtagattttggtttcagactgccttctgctttagataacagacctttgaag
tttcaggaatttgaaaaagttataagaaaatttatgatggtctcggcaactccgggaaca
tacgagcttaatagaagcaaaaaatatatagtggatttgattattcgccctactggactt
gtagatccagaaattgtcatccgtcctataagcgggcagatacaggatttaatgcaggaa
atacggaaaaatgttgagaaaaaacagagaaccttagttactacgcttacaaaaaaaatg
tccgaagatttggcggcttatttgaaagaaaaagggtttaaagttgaatatttgcattct
gaaatagatactttaacaagaatagaaatacttaaaaatctgcgtcttggtaaatttgac
gttttagtgggaataaatcttttgagagaaggattagatttgcctgaagtatctttggta
gttgttttagatgctgacaaagagggctttttgcgttctgaacctacgcttatccagatt
tgcggaagagctgcgagaaatattgacgggcgagtcattttctatgcggatactgtgacc
ggttcgatgcagagagctttaagagaaatgaaccgcaggcgcgataaacagcttgaacat
aataaaaaaaacaatattaaacccaagtcaataatcaaagccgttcacgaacttgacgag
tttagaaatttatcaagagaagaatctatgaatcatattgttgccgaagaacagcttaat
tataatatcactcctaaaaatattggcaacataataaaagaagttgaattacagatgaga
gaatctgctgacaatcttgattttgaatcagcggcagccttaagggacagaatgcttgaa
ctaaaaaatatgaaatcctgcaaatcttctaagcgttaa
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