Candidatus Endomicrobiellum trichonymphae Rs-D17 genomovar Ri2008: TGRD_632
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Entry
TGRD_632 CDS
T00755
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rsd
Candidatus Endomicrobiellum trichonymphae Rs-D17 genomovar Ri2008
Pathway
rsd00300
Lysine biosynthesis
rsd00470
D-Amino acid metabolism
rsd01100
Metabolic pathways
rsd01110
Biosynthesis of secondary metabolites
rsd01120
Microbial metabolism in diverse environments
rsd01230
Biosynthesis of amino acids
Module
rsd_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rsd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
TGRD_632
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
TGRD_632
Enzymes [BR:
rsd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
TGRD_632
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
RE_Bpu10I
Motif
Other DBs
NCBI-ProteinID:
BAG14126
UniProt:
B1GYN3
LinkDB
All DBs
Position
complement(942320..943552)
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AA seq
410 aa
AA seq
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MPQFEGNDLYIEQVKLSDIAKKYKTSTYVYSKSKIVTNFENYKKALGSREGLICFACKTN
SNGTILKLLAKLGAGADTTSGGEIYRCLKADFDPSKIVYAGVGKTAEEIEYALKSRIFMF
NVESFEELDAIDKIAAKIKIKAKIAFRINPHVDPDTHSYIITGKKGTKFGIPYEEAVKAY
LAAKQKKNIEILGIHSHIGSQILDIDSFRLAAQKIKKIVNIVEKNGIKLEYVNFGGGLGV
EYKKDQKAPSPKQLISELFPVFDENKKFIFEPGRSIIANAGHLLVKVIYRKISGGKSFLI
TDAGMNDLIRPTLYEAYHEILPVKMTNDKKVKTDVVGPICESGDFMGKDRMLPFVEQGGY
LLITCAGAYGFAMSSEYNSRPLLAEVLVNGDKTMLIRKRAKYEDLLLNEV
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaatttgaagggaatgatttgtatatcgaacaggtaaaattatcagatattgca
aaaaagtataagaccagcacctatgtttattcaaagagtaagattgtgactaactttgaa
aactataaaaaagcgctaggttccagagaagggcttatatgttttgcctgtaaaacaaat
tcaaatggaacgattttaaagctgcttgctaaactcggagccggagcagatacaacttcc
ggtggcgaaatatacagatgtttaaaagcagattttgatccatcaaagatagtctatgcg
ggcgtaggtaaaactgcagaagaaatagaatatgctttaaaaagtagaatttttatgttt
aatgttgaatcttttgaggagcttgatgcgatagataaaatagccgctaaaattaaaatt
aaagcaaaaattgcattccgaataaatcctcatgttgatcctgatactcattcttatata
attactggcaaaaaaggaacaaagtttggtattccttacgaagaagcggtgaaagcgtat
ttagctgcaaagcaaaagaaaaatattgaaattctcgggatacattcgcatatcggttcg
cagattttggatatcgattcgtttaggcttgcggcgcagaaaataaaaaagattgttaac
atcgtggaaaagaacggcataaaacttgagtacgtaaacttcggcggaggtctcggtgtc
gaatataaaaaagatcaaaaagctccgtctcctaagcagctgatttcagaactttttccg
gtgtttgacgaaaataagaaatttatttttgaacctggtcgttcaataatagcaaatgct
gggcatcttcttgtgaaagttatatataggaagatttcgggtggaaaaagttttcttatt
accgacgctggaatgaacgatttaataagacctactttatatgaagcttatcacgagatt
ttgcctgtaaaaatgacaaatgataaaaaagttaaaaccgatgttgtgggacctatatgc
gaaagcggcgactttatgggtaaagacagaatgcttccttttgtggagcagggcggatat
cttcttataacttgtgccggcgcttatggatttgcgatgtcgtcggaatataattctaga
cctttactcgcggaagttttagttaatggtgacaaaaccatgttaataagaaaaagagca
aaatatgaggatttgttgttgaacgaggtttga
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