Candidatus Endomicrobiellum trichonymphae Rs-D17 genomovar Ri2008: TGRD_664
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Entry
TGRD_664 CDS
T00755
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rsd
Candidatus Endomicrobiellum trichonymphae Rs-D17 genomovar Ri2008
Brite
KEGG Orthology (KO) [BR:
rsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsd03032
]
TGRD_664
03400 DNA repair and recombination proteins [BR:
rsd03400
]
TGRD_664
Enzymes [BR:
rsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TGRD_664
DNA replication proteins [BR:
rsd03032
]
Prokaryotic type
DNA Topoisomerases
TGRD_664
DNA repair and recombination proteins [BR:
rsd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TGRD_664
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Ribosomal_aS21
Zn_ribbon_recom
Toprim_4
ADK_lid
MIS13
InlK_D2
Sec20
Motif
Other DBs
NCBI-ProteinID:
BAG14157
UniProt:
B1GYR4
LinkDB
All DBs
Position
999241..1001463
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AA seq
740 aa
AA seq
DB search
MSKYLVIVESPTKEKTISKILGKDFTVKSSYGHIRDLPKNKLGIDIEDNFKPTYKNISKS
KKLISDLKKKAENSDKIYLATDFDREGEAIAWHLKEALKLPESKISRITFHEITTEAILK
AVKHPRNLDMKLVNSQQARRILDRLVGYKLSPLLWKKVKPGLSAGRVQSVAVMLICKREE
EFKSFIPVEYWSIEAELSKLEENTTPFKSLLFSKNDVKFDKLSVKNKEQSDETLKELEGA
KYIVKSVETKQRKRSPYAPYTTSTMQQDASRKLGFSASKTMSAAQKLYEGVHIGNSTNAG
LITYMRTDSLNIAKSVQSETLKFIEYSYGSNFLPKIPRIYKTKTKGAQEAHEAIRPISPN
RIPSEVKQYLSEDELKLYNLIWKRFLASQMADAVYNTVTAEILAKDYLFKSLESTLIFDG
FLKVYNADDDEKETKKLPSLKSGEQLNLLRLLPLQHFTEPPPLYDVASLIKALEEHGIGR
PSTYAPTIKTILDRLYVHLDGKKFVPTNRGIVVNNVLKDHFGNIINVEFTASVEEKLDKI
AEDKAVWQNVLKDFYKPFKKDLSEAEKNLQKQKVQAQQTSEICPNCGKNMVIRYSRKVQF
LGCSGYPECKTTLSLDKDGKIAAAPRETDMKCDKCGSHLIKKTGFAGKQYLSCKNYPECK
TLYNINKDGNKIIYPEPEHTDIKCNKCGSEMLKKIGKRGPFLTCSAFPKCRNLQWIKTNK
TPKSKTYKTVKLSEKKTTKK
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaatatttagttatagttgaatctcccacaaaagaaaaaacaatatcaaaaatt
ttaggtaaagattttaccgtaaaaagttcttatggacatataagagatctgcctaaaaat
aaactcggcatcgatattgaagacaattttaaaccgacatataaaaacatatcaaaatct
aaaaagcttatatcagacctgaaaaaaaaagctgaaaattccgacaaaatttatcttgcc
accgactttgaccgcgaaggagaagccattgcatggcatttaaaagaagcattaaaactt
ccggaatctaaaatttcaagaataacgttccacgagattacgaccgaagcaattcttaaa
gccgtaaaacatcctagaaatctggatatgaagcttgtaaacagccagcaggcgcgcaga
attttagacaggctcgtaggctataaactttctccacttttatggaaaaaagtaaagccc
ggactttccgctggaagagttcagtccgtagccgtaatgcttatatgcaagagagaagaa
gaatttaaaagttttattccggtagaatactggagcatcgaagcagaactgtcaaaactt
gaagaaaacacaacgccttttaagtcgctacttttttcaaaaaacgacgtaaaattcgat
aaactctcagtaaaaaacaaagagcagtccgatgaaacattaaaagaacttgaaggtgca
aaatacattgtaaagtcggttgaaacaaaacagcgcaaacgctctccctatgcgccttac
accacttcaacaatgcagcaagatgcttcaagaaaactcggtttttcagcttcaaaaaca
atgtctgcagcacagaaactctatgaaggcgttcatatcggcaacagcacaaacgccgga
cttataacttatatgagaactgattctttaaatattgcaaaaagcgttcagagcgaaacg
ttaaaattcatagagtattcttatggaagcaattttctccccaaaattcctagaatttat
aaaacaaaaaccaaaggagcgcaagaagcacacgaagcgataagacctatctctccaaac
aggataccgtcggaggtaaagcaatatttatcggaagatgaattaaaactttacaattta
atatggaaaagatttttggcaagccagatggcagatgcggtttataataccgtaacagcg
gaaatcttggcaaaagactatttgtttaagtcgttagaaagcacattaatttttgacgga
tttctgaaagtttacaatgcggacgacgatgaaaaagagacaaaaaagctcccttcttta
aaaagcggcgaacagttaaatctcttacggctgcttcccttgcagcactttacagaacca
ccaccgctctatgacgtagcaagtttaattaaagctcttgaagaacacggcataggaagg
ccgtcgacttacgctcctactattaaaactattctggacagattatacgttcatcttgac
ggcaaaaaatttgttcctacaaatcgcggcattgtcgtaaacaacgttttaaaagatcat
ttcgggaacataattaacgttgagtttaccgcgagcgttgaagaaaaacttgataaaatt
gcagaagacaaagctgtgtggcaaaacgttttaaaagatttttataaaccgtttaaaaaa
gatttaagcgaagcagaaaaaaacctgcaaaagcaaaaagttcaggcacagcaaacttct
gaaatatgtcccaactgcggaaaaaatatggttataagatattctagaaaagtacagttt
ttaggatgttccggatatccggaatgcaaaacgacattgtctttagataaagatggaaaa
attgccgcagctccacgggaaacagatatgaaatgtgataagtgcggaagtcatctgatt
aaaaaaacaggatttgcggggaaacaatatctttcatgtaaaaattatccggaatgcaaa
actttatacaatattaataaagacggaaacaagataatctatcccgagcctgagcatacg
gatataaaatgcaataaatgtggttcggaaatgcttaaaaaaataggtaaaagaggaccg
tttctcacctgttcggcattcccgaaatgtaggaatttacaatggatcaaaacgaacaaa
actccgaaatcaaaaacatacaagacggtaaagctttcggaaaagaaaacaacgaaaaaa
tag
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