Candidatus Endomicrobiellum trichonymphae Rs-D17 genomovar Ri2008: TGRD_749
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Entry
TGRD_749 CDS
T00755
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rsd
Candidatus Endomicrobiellum trichonymphae Rs-D17 genomovar Ri2008
Pathway
rsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TGRD_749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsd03019
]
TGRD_749
03009 Ribosome biogenesis [BR:
rsd03009
]
TGRD_749
Enzymes [BR:
rsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TGRD_749
Messenger RNA biogenesis [BR:
rsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TGRD_749
Ribosome biogenesis [BR:
rsd03009
]
Prokaryotic type
rRNA helicases
TGRD_749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
FlgT_C
MRP-S33
PG_binding_2
Motif
Other DBs
NCBI-ProteinID:
BAG14241
UniProt:
B1GYZ8
LinkDB
All DBs
Position
1119809..1121440
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AA seq
543 aa
AA seq
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MTTLKFNELNLSNEILKAVEDLGFEEATPIQSLSIPKMMTGIDIIGQSQTGTGKTAAFGI
PVLEKTNAKNKAVQSVILCPTRELAIQVAEELKLFSKYKKGINIVPVYGGQPIQRQMIAL
SKGAQIVIGTPGRVIDHLERRTLKLDTASIVILDEADEMLDMGFRDDIELILKSIPEGRQ
TVFFSATMPKEFLSLTKKYQHSPETIKVVSEKLTVPSIEQYYFDIKEHQKLEALTRCLDM
YDPKLSLVFCNTKKRVDEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSIELLIAT
DVAARGIDVDGIDMVFNFDVPKDDEDYVHRIGRTGRAGKAGKAYSFVSGKDIYKLRDIQR
YTKANIKRMQVPSLADVENTKETIMLDKVKEVLKEKDLEKYAGMAESLISDEITSLDVAA
ALLKIMLASEKREQEQKADISGNINKYSMTRLFINIGKKNGVRAGDFVGAITGETGINGS
LIGDIKILDAFSFVEVPQEYAVNIINALHSSNIKGKKVSVEPAKGNESTIGKSHPNFKNS
SKK
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgacaacattaaaatttaatgaattaaatctatcgaacgaaatacttaaagcagttgaa
gatctgggctttgaagaggctactcctatccagagtctgtcaatccccaaaatgatgacc
ggcatagacattatagggcagtctcaaacgggcacggggaaaacagcagctttcggaatt
cctgttttagaaaaaaccaatgcaaaaaataaagccgttcagtcagtaattttatgccct
accagagaacttgcaatacaagttgcggaagaattaaagctcttctcaaaatacaaaaaa
ggcattaacatagtgccggtttacggcgggcaacctattcagaggcagatgatagctctt
tcaaaaggagcacagattgtaataggaacgcccggcagagtcatagatcatctggaacgc
agaacattaaaactcgacactgcttcaatcgtaattttagacgaagccgacgaaatgctc
gacatgggtttcagagacgatatagaattaatccttaaaagcattcctgaaggaaggcaa
actgtatttttttcagctacgatgcctaaagaatttctatcccttactaaaaaataccag
cacagtcccgaaaccataaaagtcgtaagcgaaaaattaacggttccttctattgaacag
tattattttgacataaaagaacaccaaaaacttgaggctctcacaagatgcctcgatatg
tatgatcccaaactttcgcttgttttctgcaataccaagaaaagagtggacgaagttacc
tcttcacttcaggcaagaggctattatgccgacgcaattcacggagatatgaatcagtcc
caaagaaacagagtaatgtcaaaattcagaaacggttcaatagagcttctcatagctacc
gatgtcgcggcaagaggcatagacgttgatggcatagatatggtttttaattttgatgtt
cccaaagacgatgaagactatgtacatagaatcggaagaaccggcagagccggaaaagcc
ggcaaagcgtacagctttgtttcaggaaaagatatttataaattaagagatatacaaaga
tatacgaaagcaaatatcaaaagaatgcaagttccgtcgcttgccgatgttgaaaataca
aaagaaacgataatgcttgataaagtaaaagaagttttaaaagaaaaagaccttgaaaaa
tacgccggaatggcagaatccctaatttcagacgaaattacttcgttagacgttgcagca
gctctcttaaaaattatgcttgcttcagaaaaaagagagcaggaacaaaaagccgatatt
tcgggaaacataaacaaatacagcatgacaagattgtttatcaacataggtaaaaaaaat
ggcgtaagagccggagactttgtaggcgctattacgggtgaaacaggaataaacggcagt
ctgataggggacattaaaattttagacgcattttcatttgttgaagttccgcaggaatat
gctgtcaatataattaacgctttgcattcaagcaatattaaaggaaaaaaagtttccgtt
gaacctgctaaaggcaatgaaagcactatcggcaaaagtcatccaaattttaaaaattct
tcaaaaaaataa
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