Ralstonia pseudosolanacearum FQY_4: F504_2169
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Entry
F504_2169 CDS
T02751
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rse
Ralstonia pseudosolanacearum FQY_4
Pathway
rse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F504_2169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rse03019
]
F504_2169
Enzymes [BR:
rse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F504_2169
Messenger RNA biogenesis [BR:
rse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F504_2169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
P-loop_SecA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGH84683
LinkDB
All DBs
Position
complement(2336480..2337925)
Genome browser
AA seq
481 aa
AA seq
DB search
MTFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPII
QNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQ
TEQLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLP
AHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVH
LLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQG
TVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDE
RLLADIEKLIKRNLPRETLTDFDPTGEQARERERRERDERRNRTEIRRARERDERNGARV
LDHTVVRPPFRPSEDPFFSRPYESNVPAEAAEAAKPAPAGGHPRSAKRPIAALLGGVPRK
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
gtgacgttcgacacgttcggcctgcaccccgatatcctgcgggccctggccgagagcggc
tacacccgggccacgcccatccaggccgccgcgattcccgtggtgatcgccggccgcgat
gtgatgggcgcggcgcagaccggtacgggcaagaccgccggcttctcgctgccgatcatc
cagaacctgctgccggacgccaacaccagcgcctcgccggcgcgccaccccgtgcgggcg
ctgatcctcacgcccacgcgcgagctggctgaccaggtctacgacaacgtcgccaagtac
gcgaagcacacggcgctgcgcagcgcggtcgttttcggcggtgtcgacatgaatccgcag
accgagcagctgcgccgcggcgtggaggttctcgtcgccacgccgggccgcctgctcgat
cacgtgcagcagcgcagcgtgaacctgtcgcaggtgcgcatgctggtgctggacgaagcc
gaccgcatgctcgacatgggcttcctgcccgacctgcagcgcatcatcaacctgctgccg
gcgcaccggcagacgctgctgttctcggccacgttctcgcccgagatcaagaagctggca
gcgagctacctgcgccatccgcagaccatcgaagtggcgcgcagcaacgccaccgcagac
aatgttcgccaggtcatctacaccgtgccggacggccacaagcaggcggcgctcgtgcac
ctgctgcgccagcgcgccgaacagggcctgccgagtcagtgcatcgtgttttccaacagc
aagatcggctgttcgcgcctggcgagggcgctcgagcgcgagaagatcaacgccaatgcc
atccacggcgacaagacccagaccgagcgcatgcagacgctcgaagcgttcaagcagggc
acggtcgacgtgctggtcgccaccgacgtggcggcgcgcggcctcgacatctcgcagatg
ccctgcgtgatcaacttcgatctgccgttcaatgcggaagactatgtccatcgcatcggc
cgtaccggccgcgccggcgcttcgggcgatgcgctgtcgctgttcgccccgggcgatgaa
aggctgctggccgacatcgagaagctgatcaagcgcaatctgccgcgcgagacgctcacc
gatttcgatccgaccggcgaacaggcccgcgaacgcgaacgccgcgagcgcgacgagcgc
cgcaaccgcaccgagatccgtcgggcccgcgagcgcgatgagcgcaacggcgcccgggtg
cttgaccataccgtggtgcgcccgcccttccggccgtcggaggatccgttcttctcgcgt
ccgtacgagtcgaacgtgcccgccgaggctgcggaggccgccaagccggcaccggccggc
ggtcacccgcgcagcgccaagcgcccgattgccgccctgctgggcggcgtgccgcgcaag
cgctga
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