Rhodococcus sacchari: OED52_04140
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Entry
OED52_04140 CDS
T10960
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rsf Rhodococcus sacchari
Pathway
rsf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OED52_04140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsf03400
]
OED52_04140
Enzymes [BR:
rsf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OED52_04140
DNA repair and recombination proteins [BR:
rsf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OED52_04140
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UYP19755
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Position
887943..890252
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AA seq
769 aa
AA seq
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MPSRTIDGHPITLTNLDKVLYPATGTTKGELVEYYEAVAEVMLPHVAGRPGTRKRWPDGI
GGESFFEKNLPDHAPAWLDRRTVRHRERSVTYPLFDSVGGLVWLGQQAALELHVPQWRFD
GDEPGPATRIVFDLDPGPGVGLAECAEVARYVRDTVAELGWTAYPVTSGSKGLHLYVPLD
RMLSTSGASKVARQVARNLETTHPDLVTATMAKAERGGRVFVDWSQNNGSKTTVAPYSLR
GRDRPWVAAPRDWDELDDPGLAQLDFREVLDRIEEFGDLLAGLDPPLGSRNADALAEYRG
KRSASRTPEPVPDRVAPEGPGNRFVIQEHHARRLHYDLRLERDGVLASWAVPKNLPDSTG
RNNLAVRTEDHPIEYLTFHGTIPKGEYGAGSMTIWDTGTYDTEKWRDDEVIVFFHGERVE
GRYALIRTGKDQWLAHRMKDQTAPETSVDDGHRRRGRFPHDLAPMLATPGDVSDLDAEHW
AFEGKWDGYRAIAEIHDGTLALHSRSGRDVTAEYPKLRPLTTALAGHEAVLDGEIVAVDR
SGITSFSMLQRRGEGNIDYEYRVFDVLFLDGVSLLRKTYDDRRRVLEALHTATDGLLVPD
LLPGDGPEALDRSRRNGWEGVVAKRRDSVYLPGKRGSGWIKAKNWLTQTVVIGGYRRGQG
NRASTFGSLLLGVHDDHGDLVYVGKVGTGFDDETLTGITRAMRGLKRRTSPFANEVPAAE
RRDAVWLRPELVAEVRFGGWTEADRVRHASWRGFRDDVDAASVTKEEDP
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgccgagccgcacgatcgacggtcaccccatcaccctgaccaacctcgacaaggtcctg
tatccggccaccggcaccaccaagggcgagctggtggagtactacgaggccgtggccgag
gtgatgctgccgcacgtcgccggccggcccggcacccgcaaacgctggcccgacgggatc
ggcggggagtccttcttcgagaagaatctgcccgaccacgccccggcctggctcgaccgc
cgcacggtccgacacagggaacgctcggtgacctacccactgttcgactccgtcggcggg
ctcgtgtggctcgggcagcaggccgccctcgaactgcacgtgccgcagtggcggttcgac
ggcgacgagcccggcccggcgacccggatcgtcttcgacctcgacccgggaccgggggtg
ggactcgccgagtgcgccgaggtcgcccggtacgtacgcgacaccgtcgcggaactcgga
tggacggcgtatccggtcaccagcggcagcaagggcctgcatctgtacgtgccgctcgac
cggatgctgagcacgtccggggcgtcgaaggtggccaggcaggtcgcgcggaatctcgag
accacccaccccgatctcgtcaccgcgaccatggcgaaggccgaacgcggcggcagggtc
ttcgtcgactggagccagaacaacggctcgaagacgaccgtcgccccctattcgctgcgc
ggccgcgaccgaccctgggtcgcggcgccgcgcgactgggacgaactcgacgatcccggt
ctcgcccagctcgatttccgggaggtcctcgaccgcatcgaggagttcggtgacctgctg
gccgggctcgatccgccgctcggcagccggaacgcggacgctctcgccgagtaccggggc
aaacgcagcgcgtcgcggacccccgaacccgtgccggaccgggtggcgccggaggggccg
gggaaccggttcgtcatccaggagcaccacgcgcggcgcctgcactacgacctgcgcctc
gaacgcgacggggtcctcgcgtcgtgggcggtgccgaagaacctccccgattcgacggga
cgcaacaatctcgccgtccgcaccgaggaccatcccatcgagtacctcaccttccacggc
acgatccccaagggggagtacggcgcggggagcatgaccatctgggacaccggaacctac
gacaccgagaagtggcgcgacgacgaggtgatcgtcttcttccacggcgagcgcgtcgaa
gggcgctatgcgctgatccgcaccgggaaggatcagtggctcgcccaccgcatgaaggac
cagacggcaccggagacctcggtcgacgacgggcaccgccgccggggtcgtttcccgcac
gatctcgcacccatgctcgccacccccggcgacgtctccgatctcgacgccgaacactgg
gccttcgagggcaagtgggacggctaccgcgctatcgccgagatccacgacggcaccctc
gcgctgcacagccggtcgggacgcgatgtcaccgccgaatacccgaagctgcgtccgctc
acgaccgccctggccggtcacgaggcggtgctcgacggggagatcgtcgccgtcgaccgc
tcggggatcaccagcttctccatgctgcagcgccggggggaggggaacatcgactacgag
taccgcgtgttcgacgtgctcttcctcgacggggtctccctgctgcgcaagacctacgac
gaccgccgtcgcgtcctcgaagcactccacaccgcgaccgacgggctgctcgtccccgac
ctgctgccgggcgacggacccgaggcgctcgaccgcagccggcgcaacggctgggaaggg
gtggtcgccaagcggcgcgactcggtgtacctgccgggcaaacgcggctccggctggatc
aaggccaagaactggctcacccagaccgtggtgatcgggggataccggcgcgggcagggc
aaccgcgcgtcgaccttcgggtcgctgctgctcggcgtgcacgacgaccacggcgatctc
gtgtacgtcggcaaggtcggcacgggtttcgacgacgagaccctcaccggcatcacccgg
gcgatgcgggggttgaagcgtcgcaccagtccgttcgcgaacgaggtccccgccgcggaa
cgccgcgacgcggtgtggctgcggccggaactcgtcgcggaggtgcggttcggcggctgg
acggaagcggaccgggtgcggcacgcgagctggcgcggtttccgcgacgacgtggatgct
gcgtccgtcacgaaagaggaagatccatag
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