Rhodococcus sacchari: OED52_04420
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Entry
OED52_04420 CDS
T10960
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rsf Rhodococcus sacchari
Pathway
rsf03420
Nucleotide excision repair
rsf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OED52_04420 (pcrA)
03430 Mismatch repair
OED52_04420 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsf03400
]
OED52_04420 (pcrA)
Enzymes [BR:
rsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OED52_04420 (pcrA)
DNA repair and recombination proteins [BR:
rsf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OED52_04420 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
OED52_04420 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
OstA_2
Serine_rich
DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UYP19809
LinkDB
All DBs
Position
937986..940364
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AA seq
792 aa
AA seq
DB search
MNTPVALDRSHPGSDALLEGLNPQQREAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLLAE
RGVLPGQILAITFTNKAAAEMRERVAGLVGPRANAMWVSTFHSSCVRILRAQAGLLQGMN
SNFTIYDADDSRRLLTMIAKDLELDSKKYSARLLSTQISNLKNELIGPEEAAHDAETDPA
ATELGRVVARVYAHYQQRLRAANAFDFDDLIGETVELLQNHPQVAEYYRRRFRHVLVDEY
QDTNHAQYVLVRTLVGDPDEESAVEPSELCVVGDADQSIYAFRGATIRNIEEFERDYPQA
RTILLEQNYRSTQNILSAANAVISRNAGRREKRLWTDSGEGELITGYVADNEHDEARFVA
AEIDRLVDTGEVTYSDIAVFYRTNNASRAFEDVFIRHGVPYKVVGGVRFYERKEVRDVVA
YLKVLDNPDDTVSLRRILNTPRRGIGDRAEACVAVHAERLGVSFGQALLDAAAGQVALLN
TRAQKAIAGFVEMLDDLRSMLVVNDADGNDVADIGDVVEAVLDRTGYRAELSASDDPQDG
ARLDNLNELVSVAREFSADVRNAAGFVDDEREEGDPEPGSLAAFLEKVSLVADADQIPEN
EAGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPAELSEERRLAYVGITRARRR
LYVTRAVLRSSWGQPMTNPESRFLQEIPQHLLDWRRTEPAPARGGAIGAGTGSRFGAGER
RGASGPSGFGAARGRGNQLVLAVGDRVSHDKYGLGTVLETRGSGPTATVVIDFGSAGKVR
LMLVGGVPMVKL
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgaacactcccgtcgcgctcgatcgttcccatcccggatcggatgccctcctcgagggg
ctcaatccacagcagcgggaggcagtcgtccacgaggggtcgcccctgctcatcgtggcg
ggcgccggctccggcaagaccgccgtgctcacccgccgcatcgcctacctgctcgccgag
cgcggggtgctgcccgggcagatcctcgccatcaccttcacgaacaaggccgccgccgag
atgcgcgaacgcgtggccgggctcgtcggcccgcgcgccaacgcgatgtgggtgtcgacc
ttccattcgagctgcgtgcgcatcctgcgtgctcaggcgggcctgctgcagggaatgaac
tccaacttcacgatctacgacgccgacgactcgcgccggctgctgacgatgatcgcgaag
gacctcgaactcgactccaagaagtactcggcgcggctgctgtcgacgcagatctcgaac
ctcaagaacgagctgatcgggccggaggaggccgcgcacgacgcggagaccgatcccgcc
gcgaccgagctcggccgggtcgtcgcccgcgtctacgcccactaccagcagcggctgcgg
gccgcgaacgccttcgacttcgacgacctcatcggcgagacggtggagctgctgcagaac
cacccgcaggtcgccgagtactaccgccgccgcttccggcacgtgctcgtcgacgagtac
caggacaccaaccacgcccagtacgtgctggtgcgcaccctggtcggcgaccccgacgag
gagtccgccgtcgaaccgagcgaactgtgcgtggtgggcgacgccgaccagtcgatctac
gccttccgcggcgccacgatccgcaacatcgaggaattcgagcgcgactacccgcaggcc
cgcaccatcctgctcgagcagaactaccgctcgacccagaacatcctgtccgcggccaac
gccgtcatctcccgcaacgccggccgtcgcgagaagcggctgtggacggattccggtgag
ggcgagctcatcaccggttacgtcgccgacaacgagcacgacgaggcacggttcgtcgcc
gccgagatcgaccggctcgtcgacaccggtgaggtcacctattcggacatcgcggtcttc
taccgcaccaacaacgcctcccgcgccttcgaggacgtcttcatccggcacggtgtgccc
tacaaggtcgtcggtggggtgcggttctacgagcgcaaggaggtgcgcgacgtcgtcgcc
tacctgaaggtgctcgacaatcccgacgacaccgtgagcctgcgtcgcatcctcaacacc
ccgcgtcgcggtatcggcgaccgggcggaggcgtgcgtcgcggtgcacgccgagcggctc
ggcgtgagcttcggccaggcgctcctcgacgcggcggccggacaggtcgcgctgctgaac
acgcgggcgcagaaggcgattgccggtttcgtcgagatgctcgacgatctgcggtcgatg
ctggtcgtcaacgacgccgacggcaacgacgtcgcggacatcggcgacgtggtcgaggcc
gtcctcgaccgcaccggataccgcgccgaactgtcggcgagcgacgacccgcaggacggc
gcccggctggacaacctcaatgaactcgtcagcgtcgcacgggaattcagcgccgatgtg
cgcaacgccgcgggattcgtcgacgacgagcgcgaggagggcgatccggagccgggatcg
ctcgcggcgttcctcgagaaggtctcgctggtcgcggacgccgaccagatccccgagaac
gaggccggggtggtcaccctcatgacgctgcacacggcgaagggcctcgagttcccggtc
gtgttcgtcaccggttgggaggacgggcagttcccgcacatgcgcgccctcggtgatccg
gccgagctgtccgaggaacgacggcttgcctatgtggggatcacccgcgcccgtcgccgt
ctctacgtgacgcgcgcggtgctgcgctcgtcctggggtcagcccatgacgaacccggaa
tcacgcttcctgcaagagattccgcaacatcttctcgactggcgccgcacggagccggcc
cccgcgcggggtggggcgatcggtgccgggacgggttcgcggttcggtgcgggcgagcgg
cgcggtgcgtcgggtccgtccggattcggtgcggcccgcggtcgtggcaaccagctggtc
ctcgccgtcggcgatcgtgtcagccacgacaagtacgggctgggcacggtgctcgagacg
cgggggtcgggacccacggcgaccgtcgtcatcgacttcggcagcgcgggcaaggtgcgc
ttgatgctcgtcggcggtgtgccgatggtcaagctgtag
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