Rhodococcus sacchari: OED52_06100
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Entry
OED52_06100 CDS
T10960
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rsf Rhodococcus sacchari
Pathway
rsf03018
RNA degradation
Brite
Enzymes [BR:
rsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OED52_06100
Messenger RNA biogenesis [BR:
rsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OED52_06100
Ribosome biogenesis [BR:
rsf03009
]
Prokaryotic type
rRNA helicases
OED52_06100
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UYP20113
LinkDB
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Position
1315378..1317246
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AA seq
622 aa
AA seq
DB search
MSEIQDAPDQETAALTFADLAIDDRVLQALSDVGYESPSPIQAATIPPLLEGRDVVGLAQ
TGTGKTAAFAVPILSRIDAAKKRPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYG
GQAYGVQLSGLRRGAQVIVGTPGRVIDHLSKGTLDISELEYLVLDEADEMLTMGFQEDVE
RILADTPDTKQVALFSATMPGAIRRLSKQYLKDPQEITVKSKTTTSANITQRWVLVSHQR
KLDALTRILEVESFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTINQL
KNGTLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAP
RERHLLKAIERATRQPLAEMQLPTVEDVNAQRVAKFNDSITEALTSDHLQLFRTFIEDYE
REHDVPLADIAAALAVLSRDGESFLMEADPEPFVPPRREREQRERPPRRFDDGPKVGRDG
QEMATYRIAVGKRHRVQPGAIVGAIANEGGLRRGDFGHISIRADHSLVELPKDLSPQTLE
ALRATRISGVLIQLQPDTGAPSGRPGSYRGRDDRRGDDRRGGDRRDHGKRDRGGRREYGE
GRGRSGDFSHRSDRGGRGGYRD
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaattcaagacgcccccgaccaggagaccgcggctctcacgttcgccgatctc
gccatcgacgaccgtgtcctgcaggctctttcggacgtgggttacgagtccccgtcgccg
atccaggcggcgaccatcccaccgctgctggagggacgggacgtcgtcggtctcgctcag
accggcaccggcaagaccgccgccttcgcggtgccgatcctctcccggatcgacgccgcc
aagaagcggccccaggcgctggtgctggcgcccacccgcgaactcgcgctgcaggtcgcg
gaggctttcggtaagtactccgcccacatcccgggcctgcacgtgctgcccatatacggc
ggccaggcctacggtgtgcaactctccggcctccgccgcggcgcccaggtcatcgtcggc
accccgggacgtgtgatcgatcacctttccaagggcaccctcgacatctccgagctcgaa
tacctcgtcctcgacgaggccgacgagatgctcaccatgggcttccaggaggacgtcgag
cgcatcctcgccgacaccccggacaccaagcaggtcgcgctgttctcggcgaccatgccg
ggtgcgatccgccggctgtcgaagcagtacctgaaggatccgcaggagatcaccgtcaag
tcgaagacgacgacgtcggcgaacatcacccagcggtgggtcctcgtctcgcaccagcgc
aagctcgacgcgctgacccgcatcctcgaggtcgagtccttcgaggccatgatcatcttc
gtccgcacgaagcaggccaccgaggacctcgccgaacgcctgcgcgcccgcggtttctcc
gcggccgccatcaacggcgacatcgtgcaggcgcagcgcgaacgcacgatcaaccagctc
aagaacggcaccctcgacatcctggtcgccaccgacgtcgccgcccgcggcctcgacgtc
gaccgcatcagccacgtcgtgaactacgacatcccgcacgacaccgagtcgtacgtgcac
cgcatcggccgcaccggccgcgccgggcgcaccggcgacgcgctgctgttcgtcgcaccg
cgggagcgtcacctgctcaaggccatcgagcgggccacccgccagccgctggccgagatg
cagctgcccaccgtggaggacgtcaacgcgcagcgcgtggcgaagttcaacgactcgatc
accgaggcgctgacctccgatcacctgcagctgttccggaccttcatcgaggactacgag
cgcgagcacgacgtgccgctcgccgacatcgccgccgcgctggcggtgctctcgcgcgac
ggcgagtcgttcctcatggaggccgacccggagccgttcgtgccgccgcgccgcgagcgc
gagcagcgggagcgtccgccgcgtcgcttcgacgacggcccgaaggtcggtcgcgacggc
caggagatggccacctaccgcatcgcggtgggcaagcggcaccgggtgcagccgggtgcg
atcgtcggcgccatcgccaacgagggtggcctgcgccgcggcgatttcgggcacatcagc
atccgtgccgatcacagcctcgtcgagctgcccaaggacctgtcgccgcagaccctcgaa
gcgctgcgcgccacccgcatctcgggcgtgctcatccagttgcagcccgacaccggtgca
ccgtccgggcgtccgggctcgtaccgcgggcgcgacgaccgccgcggcgacgaccggcgt
ggcggggaccgtcgcgaccacggcaagcgtgatcgcggtggccgacgtgaatacggcgaa
ggtcggggccggtccggcgacttctcgcaccgcagcgaccgcggtggtcgtggcggatac
cgcgactga
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