Rhodococcus sacchari: OED52_08210
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Entry
OED52_08210 CDS
T10960
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rsf Rhodococcus sacchari
Pathway
rsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OED52_08210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsf03019
]
OED52_08210
03400 DNA repair and recombination proteins [BR:
rsf03400
]
OED52_08210
Enzymes [BR:
rsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OED52_08210
Messenger RNA biogenesis [BR:
rsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OED52_08210
DNA repair and recombination proteins [BR:
rsf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OED52_08210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
UYP20491
LinkDB
All DBs
Position
complement(1799787..1801901)
Genome browser
AA seq
704 aa
AA seq
DB search
MSISSDRLRDDAEHLLRELAGPHARLRDDQWTAIEALVVQRRRALVVQRTGWGKSAVYFV
SAKLLRAQGHGPTVIVSPLLALMRNQVDAAERAGVHAATINSGNVTEWEGIHERIAAGAV
DVLLVSPERLNNPDFRDRVLPSLARDAGLVVVDEAHCVSDWGHDFRPDYRRIRTLVAELG
KGVPVLATTATANDRVVADIAAQLGVGAGAGTDGAGTLVLRGGLDRPSLHLSVVRIDEPA
RRAAWLARHLRDLPGSGIVYALTVSAAHDLAALLSDHGYPVAAYTGQTDPAEREQLEADL
LANRVKALVATSALGMGFDKPDLGFVVHLGAPSSPISYYQQVGRAGRSTEWAEVVLLPGP
EDRQIWQWFASVAFPEESLVRRVIAALDTEQPISTPALEPRVDLNRSRLEMVLKVLDVDG
AVRRVKGGWIATGQPWVYDAERYARLEEARAAEQEAMLDYERTSECRMVFLRRQLDDPEL
AAETGGCGRCDNCTGSRWPASVDDDEVARTRARLERPGIDLPPRRQWPTGMKTLGVPLSG
RITDGPQPGRALGRLSDLGWGPRLRALLDGPDAEVPASVVDAAIAVLAAWDWAERPTAVV
AMDSATHPVLVSSLASRLAQIGRLQDLGVLRRRPGNREPTAANSAYRVAALVDAWEEPDL
RGLRGPILLVDAVTDTGWTLTMAARTLVAAGAEAVLPFALAIPK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgagcatctccagcgaccggctgcgcgacgacgccgagcacctcctccgcgaactcgcc
ggaccccacgcacgcctgcgcgacgaccagtggaccgcgatcgaagccctcgtcgtccag
cggcgccgggccctcgtcgtccaacgtacgggctggggcaagtccgcggtctacttcgtc
tcggccaagctgctgcgcgcgcagggacacggcccgacggtgatcgtctcgcccctgctc
gcactgatgcgcaaccaggtcgacgcggccgaacgcgccggtgtgcacgccgcgaccatc
aactccggcaacgtcaccgaatgggaggggatccacgagcggatcgccgccggcgccgtc
gacgtgctgctcgtcagccccgaacggctcaacaaccccgacttccgcgaccgcgtcctg
ccctccctcgcgcgcgacgcggggctggtggtggtcgacgaggcgcactgcgtgtccgac
tggggccacgacttccggccggactaccgacgcatccgcacactggtcgccgagctcggc
aagggcgtcccggtcctcgcgacgaccgccaccgccaacgaccgggtggtcgccgacatc
gccgctcagctcggtgtcggggcgggcgccggcaccgacggggcgggcacgctggtgctg
cgcggcgggctcgaccggccgtcgctgcacctgtcggtggtgcggatcgacgagcccgcg
cgccgcgcggcgtggctcgcccggcacctgcgcgatctgccgggctccggcatcgtctac
gccctgacggtctcggccgcgcacgatctcgcggcgctgctgtccgatcacggctatccg
gtggcggcctacacggggcagacggatccggccgagcgcgagcagctcgaggcggatctg
ctggcgaaccgggtcaaggccctggtcgccacctcggcgctgggcatgggattcgacaag
cccgatctcggtttcgtcgtgcacctcggtgccccctcctcccccatctcctattaccag
caggtgggccgggccggccggtccacggagtgggcagaggtcgtgttgctgcccgggccg
gaggacaggcagatctggcagtggttcgcctcggtggccttcccggaggagtcgctggtg
cggcgggtcatcgccgcgctcgacaccgagcagccgatctcgaccccggcgctcgaaccc
cgcgtcgacctcaaccgctcgcggctggagatggtgctcaaggtgctcgacgtcgacggg
gcggtgcgccgtgtgaagggcggctggatcgcgacggggcaaccgtgggtgtacgacgcg
gagcgctacgcccggctcgaggaggcgcgggccgccgagcaggaggcgatgctcgactac
gagcgcacgagcgagtgccggatggtgttcctgcgccgtcagctcgacgacccggagctg
gcggcggagaccggcgggtgcggccgctgcgacaactgcaccggctcgcgctggccggcg
agcgtcgacgacgacgaggtggcccgcacccgtgcgcggctggaacggcccggtatcgat
ctgccgccgcgccgccagtggccgaccggcatgaagacgctcggggtgccgctgtcggga
cggatcaccgacgggccgcagccgggccgcgcgctggggcgcctgtccgatctgggctgg
ggaccgcgcctgcgtgccctgctggacggtccggacgcggaggtgccggcctcggtggtc
gatgcggcgatcgcggtcctggccgcgtgggactgggccgagcgcccgaccgcggtcgtg
gcgatggactcggccacccacccggtgctcgtttcgtccctcgcgtcccgattggcacaa
atcggacgattgcaggatctaggtgtattgcggcggaggccgggtaatcgggagccgacg
gccgcgaactcggcatatcgggtagccgcgctcgtcgatgcgtgggaggagcccgatctc
cgtgggctgcgtggtccgatcctgctcgtcgacgcggtgaccgacaccggctggacgctc
acgatggcggcgagaaccctcgtcgccgcgggagccgaggcggtgttgccgttcgcgctg
gcgatcccgaagtaa
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