Ralstonia syzygii subsp. celebesensis: JK151_05725
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Entry
JK151_05725 CDS
T07219
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rsg
Ralstonia syzygii subsp. celebesensis
Pathway
rsg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JK151_05725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsg03019
]
JK151_05725
Enzymes [BR:
rsg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JK151_05725
Messenger RNA biogenesis [BR:
rsg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JK151_05725
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
QQV56479
LinkDB
All DBs
Position
complement(1229344..1230975)
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AA seq
543 aa
AA seq
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MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL
HRLSAVQPNKVHTSHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI
NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN
ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL
LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGT
LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG
LLRDIERLIKRELPRTVLPGFEPDPTIAPEPIPNGRNSARSPRQGGGRNQQPRQAAAGNA
APREPRAPREPRRESSGNGQGQAQGQGQGQGRNGGGRQRQAQGQRDGQAAPKPRGGKGSG
SGNGQSQARGQRQGNGQGSGQGGQRRASSTQAAQPAQVAKPAPKQPFNGLFAKAAALLGG
RKA
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttccgaactcggcttgtcagacaagctggtacgtgccgttgccgaactcggc
tacgcagaacccaccccgattcaacgccaggccatccccgcgatcctcaagggcggtgac
ctgctcgccggcgcgcagaccggcaccggcaagaccgccggcttcacgctgccgctgctg
caccgcctgtccgccgtgcagcccaacaaggtgcatacgtcccacggcatgcgctatccc
atccgtgcgctggtgctcacgcccacgcgcgagctcgccgcgcaggtggaagagagcgtg
cgcgcctatggcaagtacctgccgctgaagtcgatggtgatgttcggcggcgtcggcatc
aatccgcagatcgatgcgctcaagcgcggcgtcgacatcgtcgtggccacgccgggccgt
ctgctggaccacgtcggccagcgcaccatcgacctgtcgcatatcgaactgctggtgctg
gacgaagccgaccgcatgctggacatgggcttcatccacgacatccgcaagatcctcaac
atcctgccgcccaagcgccagaacctgctgttctcggccacgttctcggacgacatccgc
gcgctggcagaccgcctgctggatcagcccgcgctgatcgaagttgcgcgccgcaacacc
accgccgagacggtcgaacagcgcatctacccggtcgaccgcgaacgcaagcgcgaactg
ctcgccaagctcgtgcgcgacaacgactggcaccaggtgctggtcttcacgcgcaccaag
cacggtgccaaccgcctggccgagcagctcacgcgcgacggcattccggcgctggccatc
catggcaacaagagccagtcggcgcgtacgcgggcgctgtcggagttcaaggccgggacg
ctgcgcgtgctggtcgccaccgacatcgccgcgcgcggcatcgacatcgaccagctgccg
cacgtggtcaacttcgacctgcccaacgtgccggaagactatgtgcaccgcatcggccgc
accggccgcgcgggcgcgcagggcgaggcgatctcgctggtgtgcgtggatgagcacggc
ctgctgcgcgacatcgagcgcctcatcaagcgcgagctgccgcgcaccgtcctgccgggt
ttcgagccggacccgaccatcgcgccggagccgattccgaatggccgcaacagcgcccgt
tcgccgcgccagggcggcggccgcaaccagcaaccgcgccaggcggctgccggcaacgcc
gcgccgcgcgagccccgcgcaccgcgcgagccgcgtcgagagtccagtggcaacggtcaa
gggcaagcgcaaggccagggtcagggccaaggtcgcaacggcggtggccgccagcgtcag
gcgcagggccagcgtgatggccaggctgcaccgaagccgcgcggcggcaagggtagtggt
agcggcaacggccagtcgcaagcacgcggtcagcgtcagggcaatggccagggcagtggg
cagggcggtcagcgccgcgcttccagcacgcaagccgcgcaaccggcccaggtggcgaag
cccgcgcccaagcagccattcaacggcctgttcgccaaggctgcggcgctgctcggcggc
cgcaaggcctga
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