Cereibacter sphaeroides ATCC 17029: Rsph17029_0008
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Entry
Rsph17029_0008 CDS
T00484
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rsh
Cereibacter sphaeroides ATCC 17029
Pathway
rsh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rsph17029_0008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsh03400
]
Rsph17029_0008
Enzymes [BR:
rsh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Rsph17029_0008
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Rsph17029_0008
DNA repair and recombination proteins [BR:
rsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rsph17029_0008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ABN75128
UniProt:
A3PFL2
LinkDB
All DBs
Position
1:7314..8165
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AA seq
283 aa
AA seq
DB search
MPELPEVETVRRGLEPAMAGRLIAEARVNRADLRWPFPPRMAERLTGQRVLRLRRRSKYI
LADLSGGQSLLIHLGMSGRMLVSGAQLGEFFHGHPAPSRHDHVVLEMEGGARITFNDARR
FGAMDLVATEAAEAHPLLAVLGPEPLGNAFDGAYLAARLEGRRTPIKAALLDQRIVAGLG
NIYVCEVLFRAGLAPGRLAGSLSRAEAEGLVPLIREVLLEAIEAGGSSLRDYRQADGELG
YFQHTFRVYGREGLPCVTPGCSGTVGRIVQSGRSSFHCPLCQR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagcttccagaagtcgaaaccgtgcgccgggggctcgagcccgcgatggcgggc
aggctgatcgccgaggcgcgcgtgaaccgcgcggatctgcgctggccctttcccccgcgc
atggccgagcggctgacggggcagcgggttctgcggctgcggcggcggtcgaaatacatt
ctcgcggacctctcggggggccagtcgctgctgatccatctcggcatgtcggggcggatg
ctggtctcgggcgcgcagctgggagagttcttccacggccatcccgcgccctcgcgtcac
gatcatgtggtgctcgagatggagggaggcgcgcgcatcaccttcaacgatgcgcgccgc
ttcggggcgatggatctggtggcgacggaggcggccgaggcccatccgctgctcgccgtg
ctgggccccgagccgctcggcaacgccttcgacggcgcctatctcgcggcccggctcgaa
gggcggcggacgccgatcaaggcggccctcctcgaccagcggatcgtggcgggcctcggc
aacatctatgtctgcgaggtgctgttccgcgcaggcctggcgcccggccgcctggcgggc
agcctgagccgcgccgaggccgagggcctcgtgccgctgatccgcgaagtgctccttgag
gcgatcgaggcgggcggatcctcgttgcgcgattaccgtcaggcggatggcgagctcggc
tacttccagcacacgttcagggtgtacggacgcgagggtttgccctgcgtgacgcccggt
tgctccggcaccgtggggcggatcgtgcagtcgggacgctcgtccttccactgcccgctc
tgccagagatga
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integrated database retrieval system
