Cereibacter sphaeroides ATCC 17029: Rsph17029_0135
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Entry
Rsph17029_0135 CDS
T00484
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rsh
Cereibacter sphaeroides ATCC 17029
Pathway
rsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rsph17029_0135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsh03019
]
Rsph17029_0135
03009 Ribosome biogenesis [BR:
rsh03009
]
Rsph17029_0135
Enzymes [BR:
rsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rsph17029_0135
Messenger RNA biogenesis [BR:
rsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rsph17029_0135
Ribosome biogenesis [BR:
rsh03009
]
Prokaryotic type
rRNA helicases
Rsph17029_0135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABN75255
LinkDB
All DBs
Position
1:complement(150248..152629)
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AA seq
793 aa
AA seq
DB search
MAVNPGAAARPPFGRYMTQTDIAAPLAAALAAKGYESLTPVQEAVLAEGVAGRDALVSAQ
TGSGKTVAFGIAIADQILQGADRLLFADTPIALAIAPTRELALQVARELGWLYGEAGAHI
ATCVGGMDYRTERRALDRGAHIVVGTPGRLRDHIERGSLDLSGLRAVVLDEADEMLDLGF
REDLEFILGSAPEERRTLMFSATVPKEIEALAKEFQQDAVRIQTAGERKQHADIEYRALT
VSARDKEHAIFNVLRFYEAPSAIVFCKTRLAVNHLLARMGNRGFQVVALSGELSQQERTH
ALQALRDGRARVCIATDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGSKGVSV
LIAAPSEVRKAQRLLTGAKLVADWGKPPSADEVQERDDARLLEHPVLGQDLSDEMPLAEK
LLERFGPAQMSAAFVRLWREGRSAPEVLQDLAPPEPSQRAPRERGEFGEAVWYAVAVGHT
GRAEARWLLPKICEAGGVTKNEIGAIRVQQEQTFVQIAKAAAGKFGAALEIEAGVGMVRL
DGEPMLERPERAPRKPFAERAPRARDEAPRREKAPYQPKPSRFVEEEPGEARGGWTPDDR
PERAPRPRREDGAPFAKREMNDAPRPRRESAAEDEGRKPRRTSDERPARPAAAGRSAGFK
SHGGTASRSAGYKSHGDAAPRGKRDDEGPRPYKPRGEDAPRAAGFKSHGKPVRAEGDGPR
ARPARSADDRPAKAGGFKAREDRPAKPRAEGAAERPARSGFKKDFGKKDAPRKPRAEASD
TSRRFTPPKKPRS
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
ttggccgtcaacccgggcgccgctgcgcgtcccccatttggcagatacatgacccaaact
gatattgccgcgccgctggccgcggcgcttgccgccaagggctacgagtccctcactccg
gttcaggaggcggtgctcgccgaaggcgtggccgggcgcgatgcgctcgtctcggcccag
accggctcgggcaagaccgtggccttcggcatcgccatcgccgaccagatcctgcagggg
gccgaccggctcctgttcgcggacacgccgatcgcgctcgccatcgcgcccacccgcgag
ctggcgcttcaggtcgcccgtgagctgggctggctctatggcgaagccggcgcccatatc
gccacctgcgtgggcggcatggactaccgcaccgagcggcgcgcgctcgaccgcggcgcc
catatcgtcgtgggcacccccggccgcctgcgcgaccatatcgagcgcggctcgctcgac
ctctccggcctgcgcgccgtggtgctggacgaggccgacgagatgctcgacctcggcttc
cgcgaggatctggagttcatcctgggctcggccccggaagagcggcgaacgctgatgttc
tcggccaccgtgccgaaggagatcgaggcgctcgccaaggaattccagcaggatgccgtc
cgcatccagaccgcgggcgagcgcaagcagcatgccgacatcgaatatcgcgccctgacc
gtcagcgcgcgcgacaaggaacatgcgatcttcaacgtgctccgcttctatgaggcgccc
tcggccatcgtcttctgcaagacgcggctggcggtgaaccatctgctcgcgcggatgggc
aaccgcggctttcaggtcgtggcgctctcgggcgaactctcgcagcaggagcggacccat
gcgctgcaggcgctgcgcgacgggcgcgcccgggtctgcatcgcgaccgacgtggccgcg
cgcggcatcgaccttccggggctcgagctcgtgatccacgccgatctgcccaccaactcc
gagacgctgctccaccgctcgggccggaccggccgtgcgggttccaagggcgtgtcggtg
ctgatcgcggcgccgtccgaagtgcgcaaggcgcagcggcttctgaccggcgcgaagctc
gtggccgactggggcaagccgccctcggccgacgaggtgcaggagcgcgacgacgcgcgg
ctgctcgagcatccggtgctggggcaggatctgtccgacgagatgccgctggccgagaag
ctgctcgaacggttcggtccggcgcagatgtccgcggccttcgtccggctctggcgcgag
gggcgctcggcgcccgaggtgctgcaggatctggccccgccggagccctcgcagcgcgcg
ccgcgcgagcggggcgagttcggcgaggcggtctggtatgcggtggccgtgggccacacc
ggccgggccgaagcgcgctggctgctgcccaagatctgcgaggcgggcggcgtgaccaag
aacgagatcggcgccatccgcgtccagcaggagcagaccttcgtccagatcgcgaaggcg
gccgcagggaagttcggcgccgcactcgagatcgaggcgggcgtgggcatggtgcgcctc
gacggcgagcccatgctggagcgccccgaacgcgcaccgcgcaagccgttcgccgagcgc
gccccccgcgcccgggacgaggcgccccggcgcgagaaggcgccctaccagcccaagccc
tcgcgcttcgtcgaggaagagccgggcgaggcccgcggcggctggaccccggacgaccgc
cccgagcgggcgccccggccccgccgcgaggacggcgcgccgttcgcgaagcgtgaaatg
aacgacgccccgcggccccgtcgcgagagcgcggccgaggacgagggccgcaagccccgc
cggacctcggacgagcgtccggcgcgtccggccgcggccggccgctcggcaggcttcaag
tcgcacggcggcacggcctcgcggtcggcgggctacaagtcccacggcgatgcagcgccg
cgcggcaagcgcgacgacgaaggcccgcggccctacaagccgcggggcgaggatgccccc
cgcgcggccggcttcaagtcgcacggcaagcccgtccgggccgaaggcgacgggccccgc
gcccgcccggcccgcagcgccgacgaccgccccgccaaggccggcggcttcaaggcgcgc
gaggaccgtccggcgaagccccgggccgaaggcgcggccgagcggcccgcccgctcgggc
ttcaagaaggacttcggcaagaaggatgccccgcgcaagccgcgcgccgaagcgtccgac
acgagccgtcgcttcacgccgccgaagaagccgcgcagctga
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