Cereibacter sphaeroides ATCC 17029: Rsph17029_0679
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Entry
Rsph17029_0679 CDS
T00484
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rsh
Cereibacter sphaeroides ATCC 17029
Brite
KEGG Orthology (KO) [BR:
rsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsh03016
]
Rsph17029_0679
Enzymes [BR:
rsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Rsph17029_0679
Transfer RNA biogenesis [BR:
rsh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Rsph17029_0679
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABN75792
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All DBs
Position
1:683858..685015
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AA seq
385 aa
AA seq
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MQTITTTEALAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPIE
GPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVCGFGEQVG
YETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNGRQK
WVEEELAILTDPETYTVRPEEAWLRIKTRTTSGRFLAVVKELARFREDYAQKNNVPRSRV
MKDDALLEIASTRPTNAEELGRSRLLLREGRRGDIADGILAAVKAGMEVKNEDLPKPDLS
REQLQVNPALADLLRVLLKAKSESLGVAARLIASASELDAIAAGERDLPSLKGWRLEAFG
ADALRLCRGEIALSAKGNDVRVVKL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccatcaccaccaccgaggcgctggccgccttctgcgaggccgccaaggccgaa
ccctatgtcacgatcgacacggaattcctgcgcgagcgcacctactggtccaagctctgc
ctgatccagatggcgctgccgggcaagaccggcgaggcggtgctggtggaccccatcgag
gggcccgacatgtcgctcgagccgctctacgacctcttccgccacgaggcgacggtgaag
gtcttccatgccgcccggcaggatctcgagatcttcttcgtcgaggggcgcgccttcccc
gtgccgctcttcgacacgcaggtcgcggccatggtctgcggcttcggcgagcaggtcggc
tacgagacgctggtcaagaagatcgcacgcgagcagctcgacaagacctcgcgcttcacc
gactggtcgcgccgtccgctcagcgacgcgcagaagacctatgccatcgccgatgtgacc
cacctgcgggtgatctacgaatggctttcggctcagatcgagaagaacggccggcagaag
tgggtcgaggaagagctcgcgatcctcaccgatcccgagacctacacggtccggcccgaa
gaggcttggctcaggatcaagacccgcaccacctcggggcgcttcctcgccgtggtgaag
gagctcgcccgtttccgtgaggactatgcgcagaagaacaacgtcccgcgctcgcgcgtg
atgaaggacgatgcgctgctcgagatcgcctccacgcggcccacgaatgccgaagagctg
ggccgctcgcggcttctgctgcgcgaggggaggcggggcgacatcgccgatggcatcctt
gccgcggtgaaggcgggcatggaggtcaagaacgaggatctgccgaagcccgatctctcg
cgcgagcagcttcaggtgaacccggcgctggccgatctgctgcgggtgctgctcaaggcc
aagtcggaaagtctgggcgttgcggcgcggctcatcgcctcggcctccgagctcgatgcc
attgccgcgggcgaacgcgatctgccctcgctcaaaggctggcggctcgaggccttcggg
gccgatgcgctgcgcctctgccggggcgagatcgccctgtcggccaagggcaacgacgtg
cgcgtggtcaagctctga
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