Cereibacter sphaeroides ATCC 17029: Rsph17029_0806
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Entry
Rsph17029_0806 CDS
T00484
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rsh
Cereibacter sphaeroides ATCC 17029
Pathway
rsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rsph17029_0806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsh03019
]
Rsph17029_0806
03009 Ribosome biogenesis [BR:
rsh03009
]
Rsph17029_0806
Enzymes [BR:
rsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Rsph17029_0806
Messenger RNA biogenesis [BR:
rsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rsph17029_0806
Ribosome biogenesis [BR:
rsh03009
]
Prokaryotic type
rRNA processing factors
Rsph17029_0806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ABN75917
LinkDB
All DBs
Position
1:816186..818858
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AA seq
890 aa
AA seq
DB search
MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAA
SGDAVQSGDVAGMDVVDLGEETGADALYETDGSDAGAADSGQPEAPDADEKPYRAMDHAS
DGDDEIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTY
LSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQ
EIRRDYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYR
TAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEAL
VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAV
EKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSL
ALQVLRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRVEADPSLS
SPDYVIEKFKTATRVVPEAVKVISGSADLMGAPVDEPEDDWVEEEPEIVEEAEEVAEAAE
AAPAEGQPKKKRRRRRRRRNGVNGANGSDAQENGDEGDESDEDEGDAADEPEAVEAAAAV
PELAPEAVVSAPEPAAAEPEPTPAEPVAAPAAEEPAAPRKRTRTRKPKVTEEAPAEAAAE
APAAEAPAKEPKKPRTRTSRSRKTAAAAEAVPAVEVAVTVDETPAEASLEIARTTEAVPE
TTPEAPAAEAPAAEAPVAETPAPQPEPVAEEAGEGEDNKPKRRGWWSIGR
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaaaatgcttatcgatgccacccacccggaggagacccgggtcgtggtggtg
gacggaaacaaggtcgaggagttcgacttcgagaccgtcaacaagcggcagctcgccggc
aacatctatctcgccaaggtaacgcgcgtcgagccgtcgctgcaggcggccttcgtcgat
tacggcggcaaccggcacggcttcctcgccttcgccgagatccaccccgactattaccag
atcccggtcgccgaccgtaaggcgctgctcgaggaagagcgggcctatgcgcgggcggaa
gatgacgaggaccacggccgctcgcgccgccggtcgcgccccgctccggccgctgcggcc
tcgggcgatgcggtccagtccggcgatgtggcgggcatggatgtcgtcgatctgggcgag
gagaccggagccgacgcgctctacgagaccgacggctccgacgcgggtgccgccgacagc
ggccagcccgaggcgccggatgcggacgaaaagccctaccgggcgatggaccatgcctcg
gatggcgacgacgagatcgaatccgtggccgacgaggatgtggccgaggagatccccgcg
cccaggaagccccgctcgcgccgctacaagatccaggaagtcatcaaggtgcgccagatc
atgctggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacctac
ctcagcctcgccgggcgctactgcgtgctgatgcccaacaccgcgcggggcggcgggatc
tcgcgcaagatcacccaggccgccgaccgcaagaagctgaaggagatcgcctccgagctc
gaagtgccggaaggcgcgggcctcatcatccgcaccgccggcgccaagcgcaccaagcag
gagatccggcgcgactacgaatatctcctccgcctctgggagcagatccgcgacctcacg
ctgaaatcggtcgcccccgcgccgatctacgaggaaggcgacctcatcaagcgcacgatt
cgcgacctcttcaaccgcgagatcgaggaagtgctggtcgagggcgagacgggctaccgc
accgccaaggatttcatgcggatgatcatgccggcccacgcccggcaggtgatccgctac
gatgagccgatgccgctcttcgcgcgctatcaggtggaaagctacctctcgggcatgttc
aacccggtggtccagctgaaatccggcggctacatcgtcatcggcgtgaccgaggcgctg
gtcgccatcgacgtgaactccggccgggccaccaaggaaggctcgatcgaggagaccgcg
ctcaagacgaacctcgaggcggccgaagaggtggcgcgccagctgcggctgcgcgacctc
gccggtctgatcgtcatcgacttcatcgacatggaagagcgcaagaacaacgccgccgtc
gagaagcgcctgaaggacaagctgaagaccgaccgcgcgcggatccaggtcggccgcatc
tcgggcttcggcctgatggagatgagccgccagcgcctccgcccggggatgctcgaatcg
accacccagccctgcgcccactgccacggcacgggtctgatccggtcggacgacagcctc
gcgcttcaggtcctgcgccagctcgaggaagagggcacccgcaagcgctcgaaggaagtg
cttcttcgcgcaccgattgcggttgtcaacttcctgatgaacagcaagcgcgagcatatc
gccatgatcgaggcgcgctacggcatggccgtgcgtgtcgaggccgatccctcgctctcg
agccccgattatgtgatcgagaagttcaagaccgcgacccgcgtggtgccggaagccgtg
aaggtgatctcgggcagcgccgatctgatgggtgcgccggtggacgagcccgaggacgac
tgggtcgaggaagagcccgagatcgtcgaggaggccgaggaggtcgcggaagcggccgag
gcggcgcccgccgagggtcagccgaagaagaagcgccgtcgtcggcggcggcgtcggaac
ggcgtgaacggcgccaacgggtccgacgcgcaggagaacggcgacgagggcgacgagtcg
gacgaggatgagggcgacgccgccgatgagccggaggccgtcgaagccgccgccgccgtc
ccggagctggcgcccgaagccgtcgtgagcgcgcccgagccggccgcggccgagccggag
ccgacccccgccgagccggtggccgcgcctgccgccgaggagcccgccgccccgcgcaag
cgcacccggacgcggaagccgaaggtgacggaggaggctccggccgaagccgccgcggag
gcgcccgctgctgaagcgcccgccaaggagccgaagaagccgcgcacccgcacgagccgc
agccgcaagacggccgccgcagccgaggctgttcccgcggtcgaggtggcggtgacggtg
gacgaaacgccggcggaagcctcgcttgaaatcgcccggacgaccgaggcggtcccggag
acgacgcccgaggcgcccgctgccgaagcccccgccgccgaagcgcctgtggccgaaacg
cccgcgccgcagcccgagccggtggccgaggaggccggcgagggcgaggacaacaagccc
aagcgccgcggctggtggtcgatcggccgctga
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