Cereibacter sphaeroides ATCC 17029: Rsph17029_2476
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Entry
Rsph17029_2476 CDS
T00484
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rsh
Cereibacter sphaeroides ATCC 17029
Pathway
rsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rsph17029_2476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsh03019
]
Rsph17029_2476
Enzymes [BR:
rsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rsph17029_2476
Messenger RNA biogenesis [BR:
rsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rsph17029_2476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABN77578
LinkDB
All DBs
Position
1:2611350..2612735
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AA seq
461 aa
AA seq
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MPAHRKRPMADFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGK
TLAFGLPLLHRLLGVGHPPPPRTIRALILAPTRELVTQIATNLELFTKGTPVKVVTITGG
ASINRQTERLARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRK
IARFLPLKRQTLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDK
AKLLESYLQKHPREQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFR
DGSLDVLVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPA
EMEEFRAVEKLLKQPIPVIGGAPWAADIVAAAPRPGQKPRQGGRPKTGAKPQGKPQAKAQ
PKPQGAAKAHPRAGRPAGAPGGHAAPKRAARGPRRGDAARG
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcacaccgaaagagacccatggctgatttcagcaccctcgggctgtccgagcga
ctcatgcagggcctggccaaggcccagttcacccaaccgacgccgatccaggtcgaggcg
atcccctacgtcatgcagggccgcgacctgatgggcctcgcccagaccggcaccggcaag
acgctggccttcgggctgccgctcctgcaccggctgctcggcgtgggccacccgccgccg
ccgcgcaccatccgcgccctgatcctcgcccccacgcgcgagctggtgacccagatcgcg
accaacctcgagctcttcaccaagggcacgccggtcaaggtcgtcaccatcaccggcggc
gcctcgatcaaccgccagaccgagcggctcgcccgcggcgccgacatcatggtggccacc
cccggccgcctgatcgacctgctcgaccgcaatgcggtggtgctcgaccacaccggctat
ctggtgctggacgaggccgaccagatgctcgacatgggcttcatccacagcctgcggaag
atcgcccgcttcctgccgctgaagcggcagacgctgctcttctcggccaccatgccgaag
ctgatcgaggagctggcccacacatacctgcgcgagccggtgaaggtgcaggtggccccg
cccggcaagccggtcgagaagatcgcgcagggcgtgcatttcaccccgcagggcgacaag
gcgaagctgctcgagagctacctccagaaacatccacgcgagcaggcgctggtcttcggc
cgcaccaagcacgggtcggaaaagctgatgaagctgctggtcagctggggcttcaaggcg
ggctcgatccacggcaacaagagccagaaccagcgcgaccgcacgctgaccgagttccgc
gacggctcgctcgacgtgctggtggccaccgacgtggccgcccgcggcatcgacattccc
ggcgtgagacatgtctacaactacgacatgcccaacgtgcccgagaattacgtccaccgc
atcggccgcaccgcgcgcgccggcgccgagggcagcgccgtggccttcgtggccccggcc
gagatggaggagttccgcgcggtcgagaaacttctcaagcagcccattccggtgatcggc
ggcgcaccctgggccgcggacatcgtggcagcggcgccccgtcccggccagaagccgcgg
cagggcggacggccgaagaccggcgccaagccgcagggcaagccccaggccaaggcgcag
ccgaagccgcagggcgccgccaaggcccatccgcgggccgggcgcccggcgggcgccccc
ggcggccatgcggccccgaagcgcgcggcccgcggtccgcggcgcggagacgccgcccgc
ggctga
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