Cereibacter sphaeroides ATCC 17029: Rsph17029_3236
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Entry
Rsph17029_3236 CDS
T00484
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rsh
Cereibacter sphaeroides ATCC 17029
Pathway
rsh03030
DNA replication
rsh03430
Mismatch repair
rsh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rsph17029_3236
03430 Mismatch repair
Rsph17029_3236
03440 Homologous recombination
Rsph17029_3236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsh03032
]
Rsph17029_3236
03400 DNA repair and recombination proteins [BR:
rsh03400
]
Rsph17029_3236
Enzymes [BR:
rsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rsph17029_3236
DNA replication proteins [BR:
rsh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Rsph17029_3236
DNA repair and recombination proteins [BR:
rsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Rsph17029_3236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF655
Motif
Other DBs
NCBI-ProteinID:
ABN78332
LinkDB
All DBs
Position
2:complement(297592..301083)
Genome browser
AA seq
1163 aa
AA seq
DB search
MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG
AGIQPIVGCQVSVAYETAALGERPKPPAPVVLLAQTEAGYGNLMKLSSCLYLGKEGALPQ
VTLSELERHGEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYVELQRHPG
EGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEGAYVDQVA
PRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKRPPILPRFADDEVEEL
RRQAKEGLAARLAVIPHAAPVEDYEARLAFELGIIEQMGFPGYFLIVADFIKWGKANGIP
VGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPDFDIDFCMDRREEVIRY
VQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPVEGVKPVSIQKAL
ADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIGDRPLDELVPLYQDPRSD
MPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRPLHMAADGRVLYDPPPGA
ENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGP
MENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQIAQVMGGYTLGGADLLR
RAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKFANYGFNKSHAAAYAVVS
YQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRTVAPCVNASLATFTVRDG
AVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKRIGKRPLEMLARAGAFDA
LDRNRARVFEALDALVAYSAAIHEARNSSQVSLFGEAGADIPEPRLPSRDDWLPVERLAQ
EHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMVAKLAGAVSSRQEKKSAKG
NRFAFVQLSDPTGLYECTVFSDVLEQARDLLEPGGHVVLTVEATLEGDSLKLLARGVSPI
DAVAADAGAMSLRVHLDRAEAAASVAALLARAQGRARAPVRICVRDPSGGQEIDIELGQD
FAVSPQIRSALRAVPGVEMVEEI
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgctccccgattcatccatctgcgcgtccataccgaatattcgctgctcgag
ggcgcggtgccggtgaagaagctgatcggcctctgcacggccgccgccatgcccgccgtg
gcggtgacggataccaatgccatgttcgccgcgctggaattctcggtgctggccagcggc
gccgggatccagcccatcgtcggctgtcaggtctcggtcgcctacgagacggcggcgctg
ggagagcggccgaagccgcccgcgccggtcgtgctgctggcccagaccgaggcgggctac
ggcaacctcatgaagctctcctcctgcctctatctcggcaaggagggggcgctgccgcag
gtgacgctgtccgaactcgagcggcatggagaggggctgatctgcctgaccggcgggccg
gacggaccggtgggccggcatctgcgggaggggcagcgggcgaaggccgaggcgctgctg
ggccgcctcgccgcgatctatcccgggcggctctatgtcgagctgcagcgccatccgggc
gagggcgggcggctgaccgaggccgagcgtgcgaccgagccggggcatgtcgagctggcc
tatgcgatgggcctgccgctcgtggccacgaacgacgtctattttccgaagcccgagatg
tatgaggcgcacgatgcgctgatctgcatcgccgaaggggcctatgtcgatcaggtggcg
ccgcggcggcggctcacgccgcagcattatttcaagtccgaggccgagatggtcgcgctg
ttcgccgacctgcccgaggcggtggagaacaccgtcgagatcgcgcgccgctgcgccttc
aaggcggccaagcgcccgccgatcctgccgcgcttcgccgacgacgaggtggaggagctg
cggcggcaggccaaggaggggctggccgcgcgcctcgccgtgatcccccatgcggcgccc
gtcgaggactatgaggcgcgcctcgccttcgagctcggcatcattgagcagatgggcttt
ccgggctattttctgatcgtggccgacttcatcaagtggggcaaggccaacggcatcccg
gtgggaccgggacgggggtcgggtgcgggctcgctcgtggcctatgcgctgacgattacc
gacctcgatccgttgcgttaccagcttctcttcgagcggtttctcaaccccgagcgggtc
tcgatgcccgacttcgacatcgacttctgcatggaccggcgcgaggaggtcatccgctac
gtccaggagaaatacggccgcgacaaggtggggcagatcatcaccttcggcgcgctcctc
tcgaaggcggccgtccgcgatgtgggccgcgtcctccagatgccctacgggcaggtggac
cggctgtcgaagatgatcccggtcgagggggtgaagcccgtctcgatccagaaggcgctg
gccgacgagccgcggctgcgcgaggccgcgaagaccgaggaggtggtgaagcggcttctg
gactacgggatgcaggttgaggggcttctgcgcaacgcctcgacccatgccgcgggcgtg
gtgatcggcgaccggccgctcgacgaactggtgccgctctatcaggatccgcgctcggac
atgcccgccacccagttcaacatgaaatgggtggaagccgcggggctggtgaagttcgac
ttcctcggcctgaagacgctgacggtgatccagaacgcgatcgatctgatccgcggcacg
gggcggcccctgcatatggctgcggacgggcgggtgctctacgatccgccgccgggagcc
gagaacgacatcgggcatattccgctcgaggacaaggccacctacgagctctatgcgcag
gccaagaccgtggcggtgttccaggtcgaaagctcgggcatgatggatgcgctgcgacgc
atgaagcccacctgcatcgaggatatcgtggcgctggtggcgctttaccggccggggccg
atggagaacatcccggtctattgcgaggtgaagcacgggctgcgcgatctcgagagcctg
catccgaccatcgacccgatcctgaaggagacgcagggcatcatcgtctatcaggaacag
gtgatgcagatcgcgcaggtcatggggggctatacgctcggcggcgcggaccttctccgc
cgcgccatgggcaagaagatcgccgaggagatggcgaaggagcgcccgaagttcatcgaa
ggcgcaaagaagacccacgggatcgacgcgaagaaagccggcgaagtcttcgacctgctt
gagaaattcgcgaactacggcttcaacaagtctcacgccgcggcctatgcggtcgtgagc
taccagaccgcctggctgaaggcgaaccatccggtcgagttcatggccgcggtgatgaac
tgcgatatccacctgaccgacaagctcgccgtctacaagcgcgaggtggacaagctcggc
atccgcacggtggcgccctgcgtgaatgcctcgctcgccaccttcacggtgcgcgacggc
gcggtggtctatgccttgggcgcgctgaagaacgtgggtgtcgaggcgatgcggctcatc
gtcgaggcccgcggcgaccggcccttcgccacgctcttcgacatggcgcggcgggtggag
ctgaagcggatcggcaagcgtcctctcgagatgctggcgcgcgccggggctttcgacgcg
ctcgaccgcaaccgtgcccgggtgttcgaggcgctggatgcgctggtggcctattccgcc
gccattcacgaagcgcgaaattcgagccaggtgtcgctgttcggcgaagcaggggcggac
atccccgagccgcggctgccgtcgcgcgacgactggctgccggtcgagcggctggcgcag
gagcatcaggcgatcggcttctatctctcgggccatccgctcgacgattacatgggcgcg
ctgaagcggcgcaacgtcaccacgcttgccgcgctgaccgatctggcgcagcgggggccc
atggtggccaagctcgccggtgccgtctcgtcgcggcaggagaagaagtcggccaagggc
aaccgcttcgccttcgtccagctttcggatccgacggggctctacgaatgcaccgtcttt
tcggacgtgcttgagcaggcgcgcgacctgctggagccgggcggccatgtggtgctgacc
gtcgaggccacgctcgagggcgacagtctgaagctcctcgcgcgcggggtctcgcccatc
gatgcggtggcggccgatgcgggcgcgatgagcctgcgcgtccatctcgaccgtgccgag
gccgcggcctcggtggcggcgctgctggcccgtgcgcagggccgcgcccgggcgccggtg
cggatctgcgtccgcgatccgtcgggcgggcaggagatcgacatcgagctcggtcaggat
ttcgccgtctcgccgcagatccgcagcgcgctccgcgccgtgccgggggtggagatggtc
gaggagatctag
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