Runella slithyformis: Runsl_1182
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Entry
Runsl_1182 CDS
T01553
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rsi
Runella slithyformis
Pathway
rsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Runsl_1182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsi03019
]
Runsl_1182
Enzymes [BR:
rsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Runsl_1182
Messenger RNA biogenesis [BR:
rsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Runsl_1182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
AAA_22
Helicase_C_2
Toprim
Cas3-like_C_2
P-loop_SecA
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
AEI47611
UniProt:
A0A7U3ZI17
LinkDB
All DBs
Position
complement(1375932..1377179)
Genome browser
AA seq
415 aa
AA seq
DB search
MKFEEYHIAPEIKKSLVNLGFKRPTDIQFKAIPSILKGEDVLAIAQTGTGKTAAFAIPII
HLLNERKRNNRRPDGVKCIVMVPTHELALQITEVFNRLGHFTLVETLGLFGGVAQDPQIA
KLNKGVDVVVATPGRLFDLVSQGHLKLDRVEVLILDEADHMLDLGFIKDIRDLLRHLPRQ
RQTLFFSATIDDKIKKLAYSLINSGAIRIQISPKDPVAKNIEHFVAYVEMDDKRFFLERI
INEHPESKIMVFVRTKVRAERVAKALERMEIKSLTLHGDKEQKDRLAALNDFKSGKTKVL
IATDISARGIDITGVDYVINYDLPEQAENYVHRVGRTGRGTLKGNAVSFCSPEEKPILEE
IETYLDKPIDVLQISKADYDSMIDFTNDNSGNLQVLLREIEELEESRKKKKRKKR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgaagagtatcacattgcccccgaaatcaagaagagtttagtcaatctgggt
ttcaaacgtcccaccgacattcagtttaaagcgattccttccattttgaaaggggaagat
gtgttggccattgcccaaaccgggacgggaaaaaccgccgcgtttgccattcccatcatt
catttactcaacgaacgcaaacgaaataaccgccgccccgacggcgtgaagtgcatcgtc
atggtgcccacgcacgagctggcgctgcaaattaccgaagtattcaaccgcctcgggcat
tttaccctggtcgaaacgctgggcctgtttgggggagttgcgcaggatccgcagatcgcc
aaactgaacaagggcgtggatgtagtggtggcaacacccggacggcttttcgacctggtc
agccagggacatttaaagctggaccgcgtggaagtactgattcttgacgaagccgaccac
atgctggatctgggctttatcaaagacattcgtgatttgctccgacacctgccgcgccag
cgacaaacactgtttttctcagctaccattgatgataagatcaaaaaactggcctattca
ttgatcaacagcggagccattcggattcagatttcgcccaaagatcccgtcgccaaaaac
atcgaacattttgtggcgtacgtggaaatggacgataaacgcttttttctggaacggatc
attaatgaacatccggaaagcaaaatcatggtctttgtacgaaccaaagtacgggccgag
cgagtggctaaggcattggaacggatggagatcaaaagcctgacgctgcacggcgacaaa
gaacagaaagaccgcctggcggcgttgaatgacttcaaaagcggaaagaccaaagtattg
atcgctaccgatatcagcgcccggggaattgacattacgggggttgactatgtgattaat
tacgacttgcccgagcaggccgaaaactacgttcaccgcgtaggacgtacggggcgcggc
accttgaaaggaaatgccgtttcgttttgcagtcccgaagaaaaacccattttggaagag
atagaaacctatctggataagcccatcgatgtattgcagatcagcaaagccgattatgac
agtatgattgactttaccaatgataactccggaaatttacaggtgcttcttcgcgaaata
gaggagttggaagaaagccgaaaaaagaaaaaaaggaaaaagagataa
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