Runella slithyformis: Runsl_1284
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Entry
Runsl_1284 CDS
T01553
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rsi
Runella slithyformis
Pathway
rsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Runsl_1284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsi03019
]
Runsl_1284
03009 Ribosome biogenesis [BR:
rsi03009
]
Runsl_1284
Enzymes [BR:
rsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Runsl_1284
Messenger RNA biogenesis [BR:
rsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Runsl_1284
Ribosome biogenesis [BR:
rsi03009
]
Prokaryotic type
rRNA helicases
Runsl_1284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_30
AAA_19
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AEI47711
UniProt:
A0A7U4E4N8
LinkDB
All DBs
Position
complement(1471347..1473059)
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AA seq
570 aa
AA seq
DB search
MEVLFDSLGLSEEILKAVTEMGFTKPSPIQAEAIPSLLEGRDVLGQAQTGTGKTAAFGIP
ALEKVDISDKRTQVLMLCPTRELAVQVTEELRRIAKYKKGLKLETVYGGDSIERQIRSLK
IGAQIVVGTPGRVMDLIERKALKLDFVNYVVLDEADEMLDMGFREDIDTILESVPDERQT
VLFSATMSKPIMGIAQKFQEDPVQIKITRKEVTNENIEQTYFEVKQRGKIEVTCRVLDAY
DLKQVIIFCNTKRKVDEVTEELSSKGYSVESLHGDLRQTQRNQVMAKFRSGAANILVATD
VAARGIDVSGIDAVINFDLPLDEEYYVHRIGRTGRAGLTGKALTLVAKDEKYRLRQIETY
TKVKIDKGVIPTFEDIVGVRKARFISQVEEAVSTGDLDLYEDMLGMLHHTTGLTTEQIVA
ALVKINMGVQKSEFADNDLAWDADRRPTERGFEKRGRFEDRGGRGEERGSGRFGDRGGDR
GPRDGGAPKRNEPGMVRLFVSVGRKDRVQPRDIVGAIAGEAGIPGRVIGSIDIFDAYSFV
DVPERDARKVVEAMSGNTIKGKMVNIEVAR
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggaagtactttttgattcattaggcctttcggaagaaattctgaaagcagtaacagaa
atgggttttactaaaccctcacccattcaggcagaagcgatcccctcccttttagaaggt
cgtgacgtattgggacaggcccagacaggaaccggcaaaacagccgccttcggtattcct
gcccttgaaaaagtcgatatctcagacaagcgtacccaagtattaatgttgtgtcctacc
cgtgagttggccgtacaggtaaccgaagagttgcgtcgtattgccaaatataaaaaaggg
ttgaaattggaaaccgtttatggcggtgattctattgagcgtcagatccgttcgttgaaa
ataggcgctcagattgtggtcggaacacccggccgtgttatggaccttattgagcgtaaa
gcacttaagctcgattttgttaattatgtagtattggatgaagccgacgaaatgcttgat
atgggctttcgtgaagatatagataccattctggaaagcgtgcccgatgagcgccaaacg
gtgttgttttcggccacgatgtcgaagccgatcatgggcattgcccagaaatttcaggaa
gatcccgtccagatcaaaattacgcggaaggaagttaccaacgaaaatattgagcaaacg
tattttgaagtaaaacaacggggcaaaatcgaagtgacctgccgtgtattggatgcgtat
gatctgaagcaggtaattatattctgtaacaccaagcgcaaagtagacgaagtaaccgaa
gaactctcttccaaaggctattcggtcgaaagtttgcacggcgatctgcgccaaacacaa
cggaatcaggtaatggctaaattccgttcaggagccgccaatatcctcgtggccaccgac
gtagccgctcgcggtatcgacgtatcgggcattgatgccgttatcaactttgacttaccg
cttgatgaagaatactatgtgcaccgtatcggccgtaccggtcgtgccggtctgacgggg
aaggcgctgacgttggtcgctaaagatgaaaaatatcgtttgcgccaaatcgagacctat
accaaagtaaaaatcgacaagggcgttattccgacctttgaagacatcgtaggtgtacgc
aaagcccgttttatttcgcaggtagaagaagcggtttcgaccggcgatctggatctgtac
gaagatatgctgggcatgttgcatcataccaccggcctcactacggagcagatcgtggcc
gctttggtcaaaatcaacatgggtgttcagaaaagcgaatttgccgacaatgatctggca
tgggacgctgatcgtcgcccgacggaaagaggttttgaaaaacgcggacgttttgaagac
cgtggcggcagaggcgaagagcgtggctcaggccgcttcggcgaccgtggcggcgacaga
gggccccgtgacggtggggctcccaagcgcaacgaacccggtatggttcgcctgtttgtg
agcgttggtcgcaaagaccgcgttcagccccgcgacatcgtaggggccattgccggcgag
gcgggtattcccggccgtgtgatcggatcaatcgatatttttgatgcgtactcgtttgtg
gatgttcccgagcgcgacgcccgcaaagtggtggaagccatgagcggcaataccatcaaa
ggtaaaatggtcaatatcgaagtggcacgataa
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