Runella slithyformis: Runsl_3046
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Entry
Runsl_3046 CDS
T01553
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rsi
Runella slithyformis
Pathway
rsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Runsl_3046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsi03019
]
Runsl_3046
03400 DNA repair and recombination proteins [BR:
rsi03400
]
Runsl_3046
Enzymes [BR:
rsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Runsl_3046
Messenger RNA biogenesis [BR:
rsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Runsl_3046
DNA repair and recombination proteins [BR:
rsi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Runsl_3046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AEI49431
UniProt:
A0A7U3ZLK7
LinkDB
All DBs
Position
3544952..3547192
Genome browser
AA seq
746 aa
AA seq
DB search
MIQVDTGVQHTLKERLKEIFGYSQFRGEQEAIINSIMGGNNTFVIMPTGAGKSLCYQLPA
ITTEGIAIVISPLIALMKNQVDQLNAFGINAQFLNSTLNKAEINKVKKDALDGTLKLLYI
APESLTKEENLDFLQRANISFVAVDEAHCISEWGHDFRPEYRRIRGIIDNINPDLPLIAL
TATATPKVQQDIVKNLRMEEAAMFKTSFNRKNLYYEIRPKLADVNKQLIKYIKNNKGKSG
IIYCLSRKTVEEVANLLNVNDVKALPYHAGLDSSTRMHNQDAFLNEEADVIVATIAFGMG
IDKPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCVMFYCIDDIQKLEKFNKDKSVTE
RDNARHLLNEMVAYANLGACRRRQLLSYFGEYMEKDCGFCDNCIKPTQRIRIQDEAVLVL
KAIDQTDERFDGDHIADLITATDNIYVTSYEHNKLEMYGAGKYKDEEEGEEYGVEFWRSM
IRQLVILGFLGKDPENFGVLKMTDKGKKYIKDPYPITISKDHTFDENENHKSNEEEDVSD
LAPAGGGNAYDEALLGLLKAMRKKLAKEKNLPPYVIFQDPSLEEMATTYPTTSQEMAQIN
GVGMGKVSKFGRPFIDLITKYVEENEIETAKDVVVKSAANKSKVKIFIIQQIDRKVDLDE
IAEAKGLGMDELIEEIEHICYSGTKLNLDYYINQIMDRDRQRDIYDYFMVAETDSIAVAM
TELAEEDVTEDELRLMRIKFLSEVAN
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgattcaggtagacacaggcgtgcagcatacgcttaaagagcgactcaaagaaatattt
ggttacagtcagtttagaggggagcaggaggctattatcaatagcatcatgggggggaat
aatacattcgtcattatgcctaccggcgcgggcaaatccctgtgctatcagttgccggcg
attactaccgaagggattgctatcgttatctctccccttattgctttgatgaaaaatcag
gtagatcaactcaatgcattcggcatcaatgcccaatttttgaattctaccctcaacaag
gccgaaatcaataaagtaaaaaaagatgctttggacgggacattaaaactcctgtatata
gcacctgaatcattgaccaaagaagagaacctcgattttttgcaaagagccaatatctct
tttgtagccgtagatgaagcccactgtatttctgaatgggggcatgatttcagaccggaa
taccgacggatcagaggcatcattgacaatatcaatcctgatcttccgctgattgccctg
actgctaccgccacgcccaaagtacagcaggatattgtcaagaacctgcgcatggaagaa
gcggcgatgtttaaaacgtcgttcaaccgtaaaaatctgtattatgaaatacggcctaaa
ttggccgatgtgaataagcaacttatcaagtacatcaaaaacaataaaggtaagtcggga
attatctattgcctcagccgtaaaacggtagaagaagtagccaacctgctgaatgttaat
gatgtaaaagcgttgccttatcatgcggggcttgattcttctacccggatgcacaatcag
gatgctttcctcaacgaagaagccgatgtgatcgtggctaccattgcctttggaatgggt
atcgataaacccgatgtacggtttgtgattcactacgatgcccccaaatcactggaagga
tattatcaggagaccggacgtgccggacgagatggactggaaggaaactgcgtcatgttc
tattgcattgacgacatccaaaagctggagaaatttaacaaagataaatcagttaccgaa
cgtgataatgcacgtcatttactcaatgaaatggtggcctacgccaaccttggagcgtgt
cgccgccgtcagttgttgagttatttcggtgagtacatggagaaagactgcggtttctgc
gacaactgtatcaagcctacccagcgcatcagaattcaggacgaagcggtactggtcctg
aaagccattgaccaaaccgatgaacgttttgacggtgaccacattgctgatctgatcacg
gctacggataatatttacgtgacaagctacgagcacaataagcttgaaatgtatggtgcc
ggtaaatataaagatgaagaagaaggcgaagagtatggcgtagagttctggcgctctatg
attcgtcaattggtgattttgggattcttaggaaaagaccctgaaaacttcggtgtattg
aaaatgacggataaaggaaaaaaatacatcaaagacccttatccgatcacgatctcgaaa
gaccatacattcgatgaaaatgagaatcataagtcaaacgaagaagaagatgtttctgat
cttgcgccggccggcgggggcaatgcctacgacgaagcgcttttaggcttgctgaaagcc
atgcgtaagaagctggcaaaagaaaaaaatcttcctccttacgtgattttccaagatccg
tcgttggaagaaatggcgactacttatcccactacgtctcaggaaatggcccagatcaac
ggggtaggaatgggaaaagtgtcaaaattcggccgaccgtttattgatttaattacaaaa
tatgttgaagaaaatgaaatagaaacggcgaaggatgtcgtggtaaaatctgccgcgaat
aagtctaaagtgaaaatatttattattcagcagatagaccggaaagtggatttggatgag
attgcggaggcaaaaggtcttgggatggacgaattgattgaggagattgaacacatatgc
tactccggtacaaaattaaatctggattattatatcaatcagatcatggaccgtgaccgc
caacgggatatttatgattattttatggtggccgaaacagacagcattgcagtagccatg
accgaattggccgaagaagatgtaacagaagatgaacttcgattgatgcgtatcaaattc
ctttcagaagtagcaaactaa
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