Runella slithyformis: Runsl_3096
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Entry
Runsl_3096 CDS
T01553
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rsi
Runella slithyformis
Pathway
rsi03030
DNA replication
rsi03430
Mismatch repair
rsi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Runsl_3096
03430 Mismatch repair
Runsl_3096
03440 Homologous recombination
Runsl_3096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsi03032
]
Runsl_3096
03400 DNA repair and recombination proteins [BR:
rsi03400
]
Runsl_3096
Enzymes [BR:
rsi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Runsl_3096
DNA replication proteins [BR:
rsi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Runsl_3096
DNA repair and recombination proteins [BR:
rsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Runsl_3096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
SSB
T2SSK
HHH_3
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AEI49479
UniProt:
A0A7U4E6M5
LinkDB
All DBs
Position
complement(3612851..3616555)
Genome browser
AA seq
1234 aa
AA seq
DB search
MQFSHLHCHTQYSLLDGAADIKKLFKKAKADEMPAIAITDHGNMFGVFEFVAEGHKTGIK
PIVGCEFYLVEDRHKKQFTKEQKDVRRHQLLLAKNAEGYRNLTKLCSLGFIEGMYGKYPR
IDKELLVKYHKGLIATTCCIGASVPQAIIKKGEEAGRQEFKWWLDLFGEDYYVEIQRHGI
RDQIVANESLLKYAKEFNVKVICSNDSHYVEQDDANAHDILLCVNTGDKQATPTNKDFDD
ANPMPKGTRFAFFNDEFYFKTKSEMLKTFSDLPESLDNTQEIVDKVELLKLNRDILLPNF
PIPEEFKKHSISQMIDFNGRMKELTADVLNQWEYLKHWTFEGALKKYKEITPEIEERLNF
ELNTIKNMGFPGYFLIVADFIQAGRDMGVLIGPGRGSAAGSAVAYAIGITNIDPIKYDLL
FERFLNPDRISMPDIDTDFDDEGRQKVIDYVVQKYGKNQVAQIITYGTMAAKSSIKDVAR
VMDLPLAEANAVVKLVPDKPTYNMNLNKVFNVPIEKMAEVISPDEVENLKKLREMLKGND
LTARVLREAVKLEGTVRNVGIHAAGIIIAPEDLTNLIPVSTSKESELLITQYEGKIIEDA
GVIKMDFLGLRNLTIIKEALRMIEANHGVKIDIDYIPLDDPKVFELFQRGDTNAVFQFES
DGMKKYMRELKPDRFEDLIAMNALYRPGPIAYIPNFINRKHGREKVEYDLPEMEEYLGDT
YGICTYQEQIMLLSQKLAGFTKGDADVLRKAMGKKQIEVLNKMKSKFIEGGKKNGLDEKK
LDKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKSHYPSEYMAAVMTSSLGNIEKLTFF
LEECKAIGLPVLGPDVNESERRFGVNKRGEIRFGLGGIKGTGDAAVESIIEERDKNGPYK
DIYDFMTRVNLRTVNKKTIESLAYAGAFDLFEDFHRAQYFTAADGEQQNLIEKLIRYANA
VQAEKSNAQASLFGGFGGGRSDIARPKAPNVEPWGDIERLRFEKEVVGFYISGHPLDMFR
LELDNFCTCTLDRVMATSELLEASDEEVTETAGPVNVEIGGKPLLFGKDVTVAGIVSSFQ
IRTTKTGNPFCIFKLEDYAGSMEMALFGEDFVKFSAYIQTGHFLFVKGKIQTRWKSDDQY
EFKISSMQLLSEVREKLTKEIKLQLDLDLLDGVLVSKLNEAVQAHPGNCSLSVSVLDNLT
RTEIKLQSRTHRVAPTNAFFKLLESMGGVKFSVN
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttcccacctacactgccatacccaatactccctgctcgacggcgcggctgat
ataaaaaagctgttcaaaaaagccaaagccgacgagatgcccgccattgccattaccgac
cacggcaacatgttcggtgtatttgaatttgtggccgaagggcacaaaacgggcatcaaa
cccattgtaggctgtgagttttatttagtggaagaccgtcacaaaaaacagtttaccaaa
gaacaaaaagacgtacgccgccaccaactgctgctggccaaaaacgccgaaggctaccga
aatctgaccaaactttgttccctgggctttatcgaaggcatgtatggcaagtatccgcgt
atcgacaaagaactgttggtaaaataccacaaaggactgatcgccactacctgttgcatc
ggggccagtgtgccgcaggccatcatcaaaaaaggcgaagaagccggacggcaggagttc
aaatggtggttggatctctttggtgaagactactacgtcgaaatccagcggcatgggatc
cgcgaccagatcgttgccaacgaatccctgctcaagtacgccaaagagtttaatgtcaag
gtgatctgctccaatgacagtcactatgtagaacaggacgatgccaacgcgcacgatatt
ttgctttgtgtaaacaccggcgacaaacaggccactcctaccaataaggattttgacgac
gccaatccaatgcccaaaggcacccgatttgcgtttttcaacgatgagttttatttcaaa
accaaatcggaaatgcttaaaacgttcagcgaccttcccgaatcgctggacaacacgcag
gagattgtcgacaaagtagaactgctgaagcttaatcgcgacattctgctgcccaacttc
cccatcccggaagaattcaaaaaacacagcatttcccagatgatcgacttcaacggcagg
atgaaagaactcaccgccgacgtgctcaatcagtgggaatacctcaagcattggaccttt
gaaggggcgctgaagaaatacaaagagattacgcccgagatcgaagaacgactcaacttt
gagttgaataccatcaaaaatatgggttttcccggctacttccttatcgtagccgacttc
attcaggcaggccgcgacatgggtgtgctcatcggccccgggcggggttcggcggcggga
agtgcggtggcctacgcgattggaatcaccaacatcgaccctatcaagtacgacctgctg
tttgagcgttttctgaatccggaccggatctccatgcccgatattgatacggacttcgac
gacgaaggtcgtcagaaagtaattgattatgtggtgcagaaatacggcaaaaatcaggtg
gcgcagatcatcacctatggtaccatggcggccaaatcgtccatcaaagacgtggcacgg
gtgatggaccttccgttggcggaagccaacgccgtggtgaagttggtgcctgataagccg
acttacaacatgaacctgaacaaggtattcaacgtgcccatcgaaaaaatggcggaggtc
atctcgcctgatgaggtcgaaaacctgaaaaagctgcgcgaaatgctcaaagggaacgac
ctcaccgcccgagtattgagagaagccgtgaaattggaaggcaccgtccgcaacgtgggc
atccacgcggcgggaatcatcattgcgcccgaagatctgaccaacctgattccggtcagt
acgtccaaagaatcggaattgctcattacgcagtacgaaggaaagatcattgaggatgca
ggcgttatcaagatggactttttagggttgcgaaacctcaccatcatcaaagaagccctg
cggatgatcgaggccaatcacggcgtcaagatcgatattgactacattccgctcgacgac
cccaaggtatttgaactcttccagcgcggtgataccaacgccgtgtttcagtttgaatcc
gacggcatgaagaaatacatgcgcgagctgaaacccgaccgttttgaggacctcatcgcc
atgaacgccctctaccgaccgggtccgatcgcttacattcctaactttatcaaccgtaaa
cacggtcgcgaaaaagtggagtatgatttgcccgaaatggaagaatacctcggagataca
tacggtatttgtacgtatcaggaacagatcatgcttctttctcaaaaactggcaggcttt
accaaaggcgatgccgacgtgctgcggaaggcgatggggaaaaaacagattgaggtactg
aacaagatgaagagcaaattcatcgaaggcgggaagaaaaacggcttggacgagaaaaaa
ctcgacaaggtatggaccgactgggaagcctttgcatcatatgccttcaacaaatcgcac
tcgacctgctacgcctttgtggcctaccaaacagcctatctcaaatcgcattatccgtcg
gaatacatggcggcggtgatgacgagctcgttgggaaacattgaaaaactgaccttcttt
ttggaagaatgtaaggccatcggcctgccggtactcggccccgacgtcaacgaatcggag
cggcgctttggtgtgaacaaacgcggcgagatccgcttcgggctgggcggtatcaaaggc
acgggcgacgccgccgtggaaagcatcattgaagaacgcgacaaaaatggtccgtacaaa
gatatttatgattttatgacccgcgttaatttgcggacggtcaacaaaaaaaccattgaa
tcgctggcctacgcaggggcatttgacctctttgaagacttccaccgtgcgcagtatttt
acggcggcagacggtgaacagcaaaatcttatcgaaaaactcatccgctacgccaacgcc
gtacaggctgaaaaatccaacgcccaggcatcgctgtttggcggatttggcggcggccgg
tctgacattgcacgccccaaagcgcccaacgtggagccatggggcgatattgagcggctg
cggtttgagaaagaagtggtcggtttctacatttccggccacccgctggatatgtttcgg
ttagaactggacaacttctgcacctgtacgctcgaccgcgtgatggccacctccgagctc
ctcgaagcgagcgatgaggaggtcaccgaaaccgcgggaccggtcaacgtagagattggc
ggtaagccgttgctgttcggcaaagacgtgaccgtggcaggtattgtgagcagttttcag
atcagaaccaccaaaacgggcaatccgttttgtatcttcaaactggaagattacgccggc
tccatggaaatggcgcttttcggagaagatttcgttaaattctcggcctacatccaaacg
gggcactttctgtttgtaaaaggtaagatacagacccgctggaaatcagacgaccaatac
gagttcaagatcagttcaatgcagttgctgagcgaagtgcgcgaaaaactcaccaaagag
atcaaattacagttggatctggacctgctggacggtgtattggtttccaaactcaacgaa
gccgtgcaggcccatcccggcaactgctcactgtcggtttcggtgttggacaacctcacc
cgcacggagataaaactccagtcccgcacgcaccgcgtagcccccaccaacgcctttttc
aaactgctggaaagcatgggcggcgtgaaattctccgtgaattaa
DBGET
integrated database retrieval system
