Runella slithyformis: Runsl_3711
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Entry
Runsl_3711 CDS
T01553
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rsi
Runella slithyformis
Pathway
rsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Runsl_3711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsi03021
]
Runsl_3711
03019 Messenger RNA biogenesis [BR:
rsi03019
]
Runsl_3711
Transcription machinery [BR:
rsi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Runsl_3711
Messenger RNA biogenesis [BR:
rsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Runsl_3711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_25
NACHT
AAA_22
Mor
AAA
Motif
Other DBs
NCBI-ProteinID:
AEI50069
UniProt:
A0A7U4E7D8
LinkDB
All DBs
Position
4304772..4306598
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AA seq
608 aa
AA seq
DB search
MLSIDDLNLKLLSELRVLAEKIGIKDQNKYSKKDLINRIFEQQTASATTEAAAPPKRIRK
PSSSTPAPTPSIPETVPIAEEKPAAPVARAEVKVEKKVEQVVKQTPIAPKRPQNHSFGSD
NSDKRSKRQRIQKEKDEEPELSFFNAPQAASVPQPQEPTAISEEMVPSSLMEEGQDFDDL
KIELPEEEFLDTSFITDSLEAEPAVEPPKPEERPREYRGDDVHNKIKRQYNNYVKEFDGL
IVNEGVLEIMSDGGYGFLRSADYNYLASPDDIYVSPSQIKLFGLKTGDSIRGSVRPPKEG
EKYFALLRVETVNGKTTEEIRDRIPFEYLTPLFPEEHIKLSGKADNYSARVLDLFAPIGK
GQRGMIVAQPKTGKTVLLKEIANAITRNHPEIYLIILLIDERPEEVTDMQRSVRAEVISS
TFDEQADRHVKVSGMVLEKAKRMVECGHDVVILLDSITRLARAYNTVTPASGKILSGGVD
ANALHKPKRFFGAARNVEHGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRRLA
NKRIYPAVDVMASGTRREDLLLDKETLQRMWILRKHLSDMNPNEAMDFLLDRMKGTRSNE
EFLVSMNR
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgctcagcattgacgatcttaacctcaagctcctgtccgagctacgggtacttgccgaa
aaaatcggtatcaaagaccaaaacaagtattctaaaaaagacctcattaaccgaattttc
gaacagcaaacggcctcagcaactaccgaagctgccgcaccgcctaagcgcattcgtaaa
ccaagcagcagtacgcctgctcccacaccttctatccccgaaactgtacccatagcagaa
gaaaagcctgctgcgcccgttgcccgggcagaagtaaaagtcgagaaaaaagtagagcag
gtagtaaagcaaacgcctattgcccccaagcgtcctcagaatcactcttttgggtcagat
aattctgacaaacgttctaaacgacagcgaatacaaaaagaaaaagacgaagaacctgaa
ctttcctttttcaacgctcctcaagctgcctcagtgcctcagccgcaggaacccactgcc
atttccgaagaaatggttccgtcttcattgatggaagagggacaggattttgatgatctt
aaaatcgaactgcctgaggaagaatttttagatacttcttttattacagacagcctggaa
gcagaaccggcagtcgagcctcccaagcccgaggaacgtccgcgcgaataccgcggggat
gatgttcacaacaagatcaaacggcagtataacaactacgtcaaagagtttgacggattg
attgtcaacgaaggggtactcgaaatcatgtcggatggcggatacggattcctgcgttcg
gctgattataattacctcgccagtccggatgacatttatgtatcaccgtcacaaatcaaa
cttttcggtttgaagaccggcgacagtattcggggctctgtgcgtccgcccaaagaaggc
gaaaaatattttgccctgctgcgtgtggaaacggtgaacggtaaaacgaccgaagagatc
cgtgatcgtattccgtttgaatacctgacgcctttatttcccgaggaacatattaaactg
agcggtaaagccgataactactccgcacgggtattggatttatttgcaccgattggaaaa
ggacagcggggtatgatcgtggcgcagcccaaaacgggtaaaacggtattgctgaaagaa
attgccaacgccattacgcgcaatcatcccgagatatacctcatcatcctcctcattgac
gaacgtccggaagaggtgaccgatatgcagcgcagtgtgcgggccgaagtgatttcgtct
acttttgatgagcaggccgaccgccacgtaaaagtatcgggcatggtgcttgaaaaagct
aaacggatggtagagtgcggtcacgatgtggtgattctgctggactccattacccgtctg
gcacgggcttacaatactgtgacaccggcgtcgggtaaaatcctgtcgggtggggtggat
gccaacgcattgcacaaacccaagcgctttttcggcgcggcccgtaacgtggagcacggc
ggctcactgaccattattgccacggcgttgattgataccggttctaaaatggacgaagtg
atctttgaagaattcaaaggaacgggtaacatggaactccaacttgaccgtcgattggcc
aacaaacgtatttatccggccgttgacgtcatggcttcgggaacgcgtcgcgaagatttg
ttgcttgataaagaaacactccaacggatgtggattctgcgtaagcacttatcagacatg
aaccccaacgaggcgatggacttcctgctcgaccgcatgaaaggcacccgaagcaacgaa
gaatttttggtttcaatgaaccggtaa
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