Runella slithyformis: Runsl_3864
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Entry
Runsl_3864 CDS
T01553
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
rsi
Runella slithyformis
Pathway
rsi00550
Peptidoglycan biosynthesis
rsi01100
Metabolic pathways
rsi01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Runsl_3864
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Runsl_3864
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rsi01011
]
Runsl_3864
Enzymes [BR:
rsi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Runsl_3864
Peptidoglycan biosynthesis and degradation proteins [BR:
rsi01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
Runsl_3864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
POU2F1_C
Motif
Other DBs
NCBI-ProteinID:
AEI50221
UniProt:
A0A7U3ZN15
LinkDB
All DBs
Position
complement(4459881..4461797)
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AA seq
638 aa
AA seq
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MSENRKFFVYGLFVLVGIIYLIRLLYLQVLDNTYETASNSIRAVPDIPMRGQVYDRNGKL
IVHNTLVYDIYVTPSKIKVADTLSLCSTLNITRTEFDSLMKIAKTYSRYRPSLFLRQLSK
EDFARIQDVLVDYPGFEYVKSSVRTYAAPVLAHALGYVSEISQKQLDAQEYPYYRQGDLV
GQSGLEKFYEEYLRGQRGVHYVMQDVHGVSKGAWKDGELDTIAQAGQNLYTSIDLDIQQY
ADSLMQGKAGAVVAIEPSSGEVLAITSAPSYDPSLFATRDFSKNYAKLALNPYRPLLNRA
VMGNYRPGSTFKTVQALVAMQEGAISPGSIFSHAGAPMKCHGHGGLTGVSSAIQWSCNPY
FYHVFRRMLYANAEKNPFKASAIGLKKWHDYTVKFGFGQKLGIDLPSEAKGILPDVEFYD
KRLGKKSWRFGQIYSMSIGEGDLLITPLKLANLAATIANRGWYIAPHLVKGVGKIDNPLP
EFKERHETGVDRHYFEYVVNGMEMAVVRGTVSRGAIIPDIAMCGKTGTSQNKKGKDHSIF
IAFAPKDNPKIAIAVFVENAGFGGFAAAPVASLIIEKYIKGHVDRKAYEQEWKNKNFLQN
VIIPKSQLPKPKEKPAPPKPEATIVSRDKAAIKLTEAP
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaatagaaagtttttcgtgtatggattgtttgtgttggtaggaattatttat
ctgatacgcctgctgtacctccaggtacttgataatacgtacgaaaccgccagtaactct
atccgggcggtacctgatattcccatgcgcggacaagtctatgaccgcaacggcaaactg
atcgttcacaataccctggtgtacgatatttacgtcactcccagcaagatcaaagtagcc
gacaccctttcgctttgcagtaccttaaatattacccgtacagagtttgacagtttgatg
aaaattgccaaaacatattcacgttaccgaccttctctttttctgcgtcagctttctaaa
gaagactttgcccgaattcaggatgttttggtggattatccgggctttgaatacgtcaag
agctcggttcgtacgtacgcggcacccgtgcttgcccacgctcttggctatgtgagcgaa
atttcccaaaaacaattggatgcacaggaatacccctactatcgtcagggagatctggtg
ggtcagagcggtctggaaaaattctacgaagaatacctgcgcggacaacgcggcgttcac
tatgttatgcaggatgtacacggggtatccaaaggtgcctggaaagacggagaactggat
actattgcgcaggcaggtcaaaacttatataccagtattgatttggacattcagcaatat
gccgacagtcttatgcaaggcaaagcaggagcggtggttgccattgagccttccagcgga
gaagtgctggccataacgtcggcaccaagctatgatccttctttatttgcaacgcgcgat
ttttcaaagaattacgccaaattagcccttaacccttaccgtccgctgctcaaccgcgcg
gtgatgggcaactaccgccccggatctaccttcaaaacggttcaggcgctggtcgctatg
caggaaggggccattagtccggggagtattttctcgcacgccggagcgccgatgaaatgc
cacggtcacggtggacttacgggtgtcagcagcgccattcagtggtcgtgcaacccttat
ttttatcacgtattcagaagaatgctgtatgctaatgccgaaaaaaacccttttaaagct
tctgccattggattaaagaaatggcatgattataccgtaaaatttggttttgggcagaaa
ctgggaattgatttaccaagcgaagcaaaagggattttgccggatgtggaattttatgac
aaaagacttggtaaaaaaagttggcgctttggccaaatatactcaatgagtattggggaa
ggagatttattaatcaccccccttaagcttgccaatttggccgccaccattgccaatcgc
ggttggtacattgcgcctcatttagtaaagggagtcggtaaaatcgacaacccactgcct
gaatttaaggagcgccacgaaacaggcgttgaccggcactattttgaatacgtagtgaac
ggcatggaaatggcggtagtacgcggtacggtatcgcgcggagcaatcattcctgacatt
gctatgtgcggaaaaacgggtacatctcagaataaaaagggaaaagaccactccattttt
attgcgtttgcccccaaagataatcccaagatcgccattgccgtctttgttgaaaatgcc
ggcttcggaggttttgccgcagcgccggtggcttcacttatcattgaaaaatacatcaag
gggcacgtagatcgtaaagcctacgaacaggaatggaaaaataagaacttcctgcaaaac
gtcatcattcccaagtcgcagcttcccaaacccaaagagaagcccgcaccgcccaaaccc
gaagcaacgattgtgagccgagacaaagccgccatcaaattaacggaagctccctag
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