Runella slithyformis: Runsl_4116
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Entry
Runsl_4116 CDS
T01553
Name
(GenBank) Alanine racemase
KO
K01798
Alr-MurF fusion protein [EC:
5.1.1.1
6.3.2.10
]
Organism
rsi
Runella slithyformis
Pathway
rsi00300
Lysine biosynthesis
rsi00470
D-Amino acid metabolism
rsi00550
Peptidoglycan biosynthesis
rsi01100
Metabolic pathways
rsi01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Runsl_4116
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Runsl_4116
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Runsl_4116
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Runsl_4116
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rsi01011
]
Runsl_4116
Enzymes [BR:
rsi01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.1 alanine racemase
Runsl_4116
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.10 UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
Runsl_4116
Peptidoglycan biosynthesis and degradation proteins [BR:
rsi01011
]
Precursor biosynthesis
Amino acid ligase
Runsl_4116
Racemase
Runsl_4116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ala_racemase_N
Ala_racemase_C
Mur_ligase_M
Mur_ligase
DLIC
Motif
Other DBs
NCBI-ProteinID:
AEI50463
UniProt:
A0A7U4E7A9
LinkDB
All DBs
Position
complement(4745274..4747772)
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AA seq
832 aa
AA seq
DB search
MTATIFQTSPIATDAVYLLTDSRQLIFPQQTLFFAIKGVRHDGHQFITDLYQKGVRQFVV
EQNSLTDSLLTTLESFENTQIWTVESSLKALQDVAKQHRAQFDIPVIGVTGSNGKTIIKE
WLGQLLSADYRIAKSPKSYNSQIGVPLSVWQLNDTHTLGIFEAGISQLHEMKSLQEIIQP
SIGIFTNIGSAHDEGFRSRKQKVTEKLRLFTQCKQLIYRADYSDIDEEIRLILKSVNPKC
ELISWGSAENALVKAEWHQDTDQTYIVLNSVLEHYDNQLFAIPFTDEASVENCIHCLILM
LTLGIPSTEIRQRVARLRPISMRLELKEGINNCYLIDDTYNNDLVGLTIALNFLSQQEQR
PHKMAILSDLLQTGQKEEELYTQINTLLQQKGVQQLIAIGAAFVRNAHWIQVEASYFADT
DDFLTKFPLQSFNNSLVLIKGARPFQFERIVHRLQQKVHGTVLEINLDALTHNLNFYRSR
VGNDTKIMVMVKAFAYGNGSAEVAQLLQFHRVDYLAVAYTDEGVLLRQNGIELPIMVMNP
TASTFDKLIEYKLEPEIYSHKILDEWLNFQPTLPLSDEEIDAVYPQVPIHLKLDTGMHRL
GFTQADLPLLLYQLQQNPSLKVASVFSHLAGADEAVHNEFTRQQFELFSSGAELLEQTLG
YRPLRHLLNSAGIVRFPEYKLDMVRLGIGLYGVEVNRLEQRSLQQIGTFKTVVSQVKHLL
PGDTIGYGRMGVLEKESFIATIALGYADGYDRRFSKGIGKVLINGALCPVVGNVCMDMTM
VDATGVNVQEGDEVIIFGNDLPISQLADQIGTIPYELLTGISERVKRVFYKE
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaaccatttttcaaacctcgccgattgctaccgatgcagtgtatttgctgacc
gacagccggcaattgattttcccccaacagaccctattctttgccattaagggcgtaagg
cacgacggtcatcagtttattacagatctttatcaaaaaggcgttcgacaatttgtagtg
gagcaaaactcgttgacagattcactgctgaccactcttgaatcgtttgaaaatacccaa
atttggaccgtagaaagtagccttaaagccctacaggatgttgccaagcagcaccgggcc
caatttgacataccggtcatcggcgttacgggcagtaatggcaaaactatcatcaaagag
tggctgggccaattactcagcgctgactatagaattgcaaaaagtcccaaaagttataat
tcacagatcggtgtgccgctatcggtgtggcagctgaatgatacgcatactttggggatt
tttgaggcggggatttcacaactccacgaaatgaaatccctacaggaaatcattcagcca
tccatcggtatctttaccaacatcggctccgcgcacgatgagggctttagaagccgtaag
cagaaagtaaccgaaaagttgcgtcttttcactcagtgtaaacaacttatctaccgcgct
gattactctgatattgacgaagaaattcgtctgatcttaaaatccgttaatcccaaatgt
gaactcatcagttggggctccgctgaaaacgcgttggtaaaggccgagtggcaccaagac
accgaccaaacttacatagtgttgaactcggtcttggagcattatgataatcaacttttt
gccataccatttacggatgaagcttctgtagaaaactgcattcattgcctgattttgatg
ctcacacttggcattccatcgacagagatccggcagcgggtagcacgcctgcggccgatc
tccatgcgacttgagctgaaagaaggcatcaacaattgctatttgattgatgatacgtat
aacaatgacttagtggggctaacgattgcgctcaattttttaagccagcaggaacaacgg
ccacataaaatggctattttatccgatctgctgcaaacggggcaaaaagaagaagaactt
tacacccaaatcaacacgctgcttcaacaaaagggcgttcagcaactgattgccatcggc
gcagcgtttgtgcgaaacgctcattggattcaggtagaagcaagctattttgccgatacc
gacgattttttgaccaagtttcctcttcagtccttcaataacagcttggtgctgatcaaa
ggtgcccgtccgtttcaatttgaacgtatcgtgcatcgcctgcaacagaaggtccacggg
acggtattggaaatcaacctggacgcgcttacgcacaatctcaatttttaccgtagccgg
gtggggaatgacaccaaaatcatggtcatggtcaaggcctttgcctatgggaacgggagc
gcagaagtggcccaactattacagtttcatcgagtggattatttggccgtagcctacacc
gacgaaggcgtgcttttacgtcaaaacgggattgaattacctattatggtaatgaatcct
acagcatctacctttgacaaactgattgaatataaattggagccggaaatctacagccat
aagattttggatgaatggctaaatttccaacccacccttcctctttccgatgaagaaatt
gacgctgtctacccgcaagtgcccattcacctcaagctcgataccggtatgcaccgattg
ggattcacccaagctgatctgcccttgttactttaccaattacagcaaaatccatcgctg
aaagttgcctctgttttcagtcatttggcaggtgcagatgaagcggtccacaatgagttt
acgcggcaacaatttgagctttttagttcgggggctgaactgcttgaacaaacgcttggg
tatcgaccgttgcgccacctgctcaattcggccggaatcgtacgttttccggaatataaa
ctggacatggttcggctgggaatcggcctttacggagtagaggtcaatcggctggaacaa
cgctcattgcagcaaataggcacttttaaaacagtggtgtctcaggtaaaacaccttctt
ccgggcgataccatcggatacggtcgcatgggtgtacttgaaaaagaatcttttatcgca
accattgcgctaggctacgccgatggctacgaccgacgtttcagcaaaggaataggaaaa
gtgcttatcaacggggcattatgtccggtggtaggaaatgtatgcatggatatgaccatg
gttgatgcgacgggtgtaaacgtacaggagggcgatgaagtaattatttttggaaatgat
ctgccaatctcacaattggcagatcaaatcggcaccattccttacgagcttctgaccgga
atcagtgagcgggtcaaacgcgttttttataaagaataa
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