Runella slithyformis: Runsl_4509
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Entry
Runsl_4509 CDS
T01553
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rsi
Runella slithyformis
Pathway
rsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Runsl_4509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsi03019
]
Runsl_4509
Enzymes [BR:
rsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Runsl_4509
Messenger RNA biogenesis [BR:
rsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Runsl_4509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
ERCC3_RAD25_C
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AEI50831
UniProt:
A0A7U4E7M8
LinkDB
All DBs
Position
5210562..5211857
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AA seq
431 aa
AA seq
DB search
MTFDSLHLIEPILRSIKTEGYTTPTPIQEQAIPIVLEGKDLLGCAQTGTGKTAAFAIPIL
QLLVQGQTHASRREKRTIKALILTPTRELAIQIGESFAAYGRHTRLKHTVIFGGVKQLRQ
TDSLQNGVDILIATPGRLIDLMAQRFVSLKHLEIFVLDEADRMLDMGFVHDVRRIIAVIP
PKRQSLFFSATMPPEIVKLADTILVKPEKVEVTPVSSTVDIIQQSVFFVDKDNKNALLLH
ILEDKSIETALVFTRTKHGADKVVKVLQRHEIKAEAIHGNKSQNARQNALNNFKEKTTRV
LVATDIAARGIDVDELAYVINFEIPEIPETYVHRIGRTGRAGAKGTAYSFCDTEERGSLK
DIQKLIAKVIPVVEDHPFPLSQKPGNEAAKAHNVAARGNRPSRPNAHSQNQSKPSGATAD
RDKKPWFKRGR
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgattcattacatttaatagagcctattctgaggtctatcaaaacagaaggc
tacactactcccacacccattcaggaacaagccattcccatcgtacttgaaggtaaagac
ctgttgggttgcgcccaaaccggtaccggaaagaccgccgcttttgccattcccattctg
caactgttggttcaggggcaaacacacgcttcacgccgcgaaaaacgtacgatcaaagcc
ttgatattgacgcctacgcgtgagttagcgatacagatcggcgaaagttttgccgcctat
ggtcgccataccagactgaaacataccgttatttttgggggagtaaaacaattacgccaa
acggattcactccaaaacggcgtcgatattctgattgctacgcccggtcgattgatcgat
ctgatggcgcagcgctttgtgagcttaaaacacctcgaaatttttgtcttggacgaggcc
gaccggatgcttgacatgggttttgtgcatgacgtacgaagaattattgcggtgattccg
cccaagcgtcaatcgcttttcttttcggctactatgccgcccgaaattgtgaaactggcc
gatactattttagtgaagcccgaaaaagtggaggtaactcccgtttcttccaccgtcgat
atcattcagcaatctgtattttttgtcgacaaggataacaagaatgcgctcctgcttcat
attctcgaagataaatccattgaaacggccttggtttttacccgaaccaagcacggcgct
gataaggttgtgaaagttctccagcgccacgaaataaaagcggaagccattcacggcaat
aaatcacagaatgcccgtcaaaatgcgttgaataatttcaaagaaaaaaccactcgggtg
ttagtcgctacggatatcgccgcgcgcggcattgacgtggatgagttggcgtatgtgatc
aattttgaaattcccgaaattcccgaaacctacgtacaccgcatcggtcgtacgggcagg
gcaggagcgaagggaacagcttattctttctgtgataccgaagaaagagggtcattgaaa
gatattcagaaactgattgccaaagtgattcccgtggtagaagatcatccgtttccgtta
agtcagaagcccggcaatgaggccgccaaagcgcacaacgtcgctgcccggggcaaccgt
ccgagccgaccgaatgcacattcacagaatcagtctaaaccttccggggcaacggccgat
cgggataaaaagccttggtttaaaagaggccgataa
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