Runella slithyformis: Runsl_4716
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Entry
Runsl_4716 CDS
T01553
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rsi
Runella slithyformis
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsi03032
]
Runsl_4716
03400 DNA repair and recombination proteins [BR:
rsi03400
]
Runsl_4716
Enzymes [BR:
rsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Runsl_4716
DNA replication proteins [BR:
rsi03032
]
Prokaryotic type
DNA Topoisomerases
Runsl_4716
DNA repair and recombination proteins [BR:
rsi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Runsl_4716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
DUF3095
BRCA2
Motif
Other DBs
NCBI-ProteinID:
AEI51034
UniProt:
A0A7U3ZPL1
LinkDB
All DBs
Position
5446848..5449310
Genome browser
AA seq
820 aa
AA seq
DB search
MSKNLVIVESPAKAKTIEGYLGADFTVKSSFGHVRDLPDKDLGVDVKNGYLPAYEVSADK
TKVINELKKLAKSSDEVWLATDDDREGEAISWHLKEALGLPKDTKRIVFREITKTALQKA
IQNPRAIDMDLVNAQQARRVLDRLVGYELSPVLWRKIKIGNNTALSAGRVQSVAVRLIVD
REREVEAHESKSSFKVIARFTLEGGKVLEAELPKNFENEAQARTFLEKCIGAAFKIKNLE
VKPGKKSPAPPFTTSTLQQEASRKLSFSVSQTMTVAQKLYEAGKISYMRTDSTNLSEEAL
QKAKDQIVTEYGDKYHHHRVFKTKSESAQEAHEAIRPTNFGELKASSDRNEQRLYELIWK
RSIASQMADAQLERTIATITISTTSEELVAQGEVIKFDGFLKVYLESKDDEEEDTKGMLP
PLNIGQVLALDILKATEKFSRPKPRYTEASLVKQLEEMGIGRPSTYAPTLSTIIKREYVV
KQDKKGQEREYKELTLKQNEIKEVKGKETYGAEKAKLFPTNTGMVVNDFLVELFPDVVDF
SFTASVEKEFDEIAEGKLSWQQMIDGFYRGFHQKIGEVGESKVLKKTEARELGIDPKSGK
PIFAKIGKFGPYVQVGEATEDAKPQYANLKKGQLVETITLEEAIELFSLPREVGFFEDKP
MVVGVGKYGPYVKHDDKFYSLDRGDDPYTIEAEACIAAIRLKRGDLAGEGEGLGFLEEKP
ITTGMGKYGPFIKHDDKYYSLPKGMSLQRVTREEALEIIQKKREAESNKVIREFPENTTV
KVLRGPYGPYIAVGKRNIKIPKDTDPASLTLEDCLKLAGG
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaacttagttatagtagagtcaccggctaaggccaaaaccatcgaagggtac
ctcggagcagattttacggtcaaatccagctttggacacgtacgcgatcttcccgataag
gatttaggcgtagacgtaaagaacggatacctccctgcctacgaagtttctgccgataaa
accaaggtaatcaacgaattgaaaaaactggcgaagtcctcggatgaggtctggctcgcc
acggatgatgaccgtgaaggagaagctatttcctggcatttaaaagaagcactgggcttg
ccaaaggataccaagcggatcgtttttcgggaaatcaccaaaacggccctgcaaaaagcc
attcagaatccacgggccatcgacatggatctggtcaatgcacagcaggcacggcgcgta
ctcgaccgactggtaggctatgaattatcacctgttttatggcgtaaaataaaaatcggc
aacaataccgcactgtcagcaggacgggtacaatccgtagcggtacgcctgatcgtagac
cgcgagcgtgaagtggaagcccacgaatcaaaatcgtcgtttaaggtcatagcccgcttt
accctggaagggggaaaagtgctggaagccgagctgcccaaaaactttgaaaatgaagca
caggcccggacgtttttggaaaaatgcatcggtgctgcgttcaaaatcaaaaatcttgaa
gtaaaacccggtaaaaaatcccccgctccgccattcaccacttctacgttacaacaggaa
gcttcccgtaagctgagcttctcggtctcacaaacaatgaccgtcgcccagaaactctac
gaagcaggtaagatctcgtacatgcgtaccgactccaccaatttgtcggaagaggcatta
caaaaagcgaaagaccaaattgtgacggaatacggggacaaataccaccatcaccgtgtt
tttaaaaccaaatcggaatcagcgcaggaagcccacgaagccattcgtccgaccaacttt
ggggaacttaaggcaagcagtgaccgcaacgagcaacgcctgtatgaactgatctggaaa
cgctccattgcctcccaaatggccgatgcgcagttggaacgtaccattgccacgatcacc
atttcgaccacaagcgaagagttggtcgctcagggcgaggtcatcaagtttgacggattt
ttgaaagtatacctcgaatccaaagacgacgaagaagaagataccaaaggtatgttgccg
cctttgaacatcggacaggttttggcgttggatattctgaaagctaccgagaaattttcc
cggcccaaaccgcgctacacggaagccagtttggtgaaacaattggaagaaatgggcatc
gggcgtccttcgacctatgccccaacgctttcgaccatcattaagcgtgagtacgtggtc
aaacaggataaaaaggggcaggaacgtgaatacaaagaactgacgcttaaacaaaatgag
atcaaggaggtaaaaggaaaagaaacctacggtgccgaaaaagccaaactattcccgacc
aataccggtatggtggtcaatgattttttggtcgagctgttccccgatgtcgttgatttt
tcttttacggccagcgttgaaaaagagtttgacgaaattgccgaaggaaaactttcctgg
caacaaatgatcgatggcttttaccggggctttcaccaaaagatcggggaagtcggcgag
tctaaagtcctgaaaaaaaccgaagcccgcgaactgggtattgatccgaagtcaggaaaa
cccatctttgccaagatcgggaagttcggaccctatgtacaggtgggcgaagcgactgaa
gacgcaaaaccgcaatacgccaacctcaaaaaagggcagttggtcgaaaccatcaccctc
gaagaagccattgaattattctccctcccgcgcgaagtgggcttctttgaagataaaccg
atggtggtgggcgtaggaaaatacggtccgtacgttaaacatgatgacaaattttactcg
ctcgaccgcggcgatgacccttataccatcgaagccgaggcgtgcatagccgccattcgc
ctcaaacgcggcgatttggccggtgaaggagaaggtttagggtttctggaagaaaagccc
atcacgacgggtatgggaaaatacggaccgttcattaagcacgacgataagtattattct
ctccccaaaggcatgagtctccagcgcgtaacgcgggaagaagccctcgaaatcattcag
aagaaacgggaagcggaaagcaacaaggttatccgtgaatttccggaaaacacaacggtc
aaggtattgcgcggaccttatggcccgtacatagccgttggaaaacgaaacataaaaatt
cccaaagataccgatcctgcaagccttacgctggaagattgtttgaagttggcagggggg
tag
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